Shewanella loihica: Shew_0407
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Entry
Shew_0407 CDS
T00489
Name
(GenBank) RNAse G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
slo
Shewanella loihica
Brite
KEGG Orthology (KO) [BR:
slo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slo03019
]
Shew_0407
03009 Ribosome biogenesis [BR:
slo03009
]
Shew_0407
Messenger RNA biogenesis [BR:
slo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shew_0407
Ribosome biogenesis [BR:
slo03009
]
Prokaryotic type
rRNA processing factors
Shew_0407
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
ABO22279
UniProt:
A3Q9Y1
LinkDB
All DBs
Position
456232..457734
Genome browser
AA seq
500 aa
AA seq
DB search
MSHIVKNRVQKKIGSELLINVTPTEARVALVEYGILQEVHIERRMKRGLVGNIYKGKVSR
VLPGMQAAFVDIGLDKAAFLHASDIVPHTECVADVEKGNFVVRDIAELVRQGQDIMVQVV
KDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEVRARLKGLTEPFVDEDGGF
IIRTAAENAGEQELIQDAAFLRRVWAKVCERRKRPGVSLLYQDLALPVRIVRDFVGTELD
QIQVDSGQTYEELLQFTQEFMPEIADKIEHYSGRVPIFDLYDVENEVQRALGRKVELKSG
GYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATHAIARQLRLRNLGGIIIIDFI
DMLNEDHKKRVLSTLEAALANDRVKTNVSGFSGLGLVEMTRKRTRESLEHVLCGECPACF
GTGSLKTVETVSYEIFREIIRLNRGYDADEFLVYCAPTVYNSLTGEESHLVAELGAYIGK
HVRLQNEPMYAQNKFDVVIM
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacatagtcaaaaacagagtacagaaaaagataggttctgagctattgatcaat
gtgacgcctaccgaggcgcgggtggcgctggtggaatatggcatcttgcaagaggtgcat
atcgagcgccgcatgaagcgtggtctggtgggcaacatctacaagggcaaggtcagccgg
gtattgcctggcatgcaggccgcctttgtggatataggtctggacaaggccgccttcctc
catgcctcagatatcgtaccccataccgagtgtgtggccgacgtcgagaagggcaacttc
gtggtacgcgacatcgccgagctggtgcgccagggtcaggacatcatggtacaggtggta
aaagatcccctgggcaccaagggcgcgcgcctcaccacagatatcaccttaccctcgcgt
tatctggtcttcatgccgggctccagccatgtgggcgtgtcgcagcgcatcgagtccgaa
gaggtacgtgcccgtctcaagggactgaccgagcccttcgtcgacgaagatggtggtttc
atcattcgcaccgccgccgagaatgccggtgagcaggagctgatccaagacgcggctttc
ctacgccgggtctgggccaaggtgtgcgagcgtcgcaagcgtccgggcgtctctctgctc
taccaagatctcgccctgccagtgcgtatcgtgcgtgatttcgtcggcacagagttggat
cagatccaggtggattcgggccagacctacgaggagctgctgcagtttacccaggagttt
atgcccgagatcgccgacaagatagaacactattccggccgggtgcccatcttcgatctc
tatgatgtggagaacgaggtgcagcgcgccttggggcgcaaggtcgagctcaagtcaggc
ggttatctgatcatagatcagaccgaggccatgacgactgtggatatcaacacaggggcc
ttcgtcggccatcgcaacctggaagagactatattcaacaccaacctggaggcgacccac
gccatcgctcgccaattgcgcctgcgcaatctgggggggatcatcattatcgatttcatc
gacatgttgaacgaagatcataagaagcgtgtactcagcaccctggaggcggcgctggcc
aacgacagggtgaagaccaacgtcagcggcttctcggggctcggcctggtggagatgacc
cgtaagcgtacccgcgagagcctggagcatgtgctgtgcggcgagtgtccggcctgtttc
ggcacaggtagcctgaagacggtcgagacagtttcttacgagatcttccgcgagatcatc
cgcctcaatcgtggctatgatgccgacgagtttctggtttattgtgccccgactgtctac
aacagcctcaccggcgaggagagccatctggtggcagaactcggcgcctatatcggcaag
catgttcgcctgcaaaacgagcccatgtacgcgcaaaacaaattcgatgtggtgataatg
tag
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