Streptomyces lincolnensis: SLINC_0934
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Entry
SLINC_0934 CDS
T04801
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sls
Streptomyces lincolnensis
Brite
KEGG Orthology (KO) [BR:
sls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sls03016
]
SLINC_0934
Enzymes [BR:
sls01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SLINC_0934
Transfer RNA biogenesis [BR:
sls03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SLINC_0934
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Paralog
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ANS63158
UniProt:
A0A1B1M3E8
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All DBs
Position
1135027..1135704
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AA seq
225 aa
AA seq
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MTEPHRTAAQHAFVALAPPDDAKNELAHALSPAYAAYPDLRWNRIEDWHITLAFLGELPV
QAVQRLRSPLADLAAARPSLELALLGGGHFDERVLWSGIEGDLDQLHELGEAVRARIRDC
DVAFVERPLRPHLTLARARRYDSASVPAAAAGLDGFTGRPWQTERLHLVGSTVSGHPGPR
RYQDIDAWTLVTGQWHPDPNPSQAAVHEHQDGSGPAMMPAQPHAS
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaccgcaccggaccgccgcccagcacgcgtttgtcgccctcgcgccgcccgac
gatgcgaagaacgagctggcgcacgcactgagcccggcctacgccgcctatcccgaccta
cgctggaaccgcatcgaggactggcacatcaccctggccttcctgggcgagctgccggta
caggccgtccagcggcttcgttcacccctcgccgacttggcggctgcccgcccttctctc
gaactggcactgctcggtggcggacacttcgacgagcgagtgctgtggagcggcatcgag
ggcgatctcgaccaactgcacgagctgggcgaagcagtacgggcgcggatcagggactgc
gacgtcgccttcgtcgaacgtccgctgcgtccgcacctcacgctggcccgcgctcgccgc
tacgacagcgcgtccgtaccggcggcggccgccggcctcgacggcttcaccggacgccct
tggcagaccgaacgtctccacctggtcggcagcacggtaagcggccacccaggcccgcgg
cgctatcaggacatcgacgcatggaccctggtcaccggccaatggcatcccgacccgaat
ccgtcacaggctgctgtgcatgagcaccaggacggctcgggccccgcgatgatgcccgct
cagccccacgcgtcctga
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