Sideroxydans lithotrophicus: Slit_0334
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Entry
Slit_0334 CDS
T01196
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
slt
Sideroxydans lithotrophicus
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slt03016
]
Slit_0334
Enzymes [BR:
slt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Slit_0334
Transfer RNA biogenesis [BR:
slt03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Slit_0334
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ADE10576
UniProt:
D5CLI8
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All DBs
Position
343456..344007
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AA seq
183 aa
AA seq
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MESKEKETVLRLFFALWPNTVERTALAAWQPPLRESCGGRAMLPDTLHTTLVFVGNVAEH
RLETLRLAAQEVSGRGFGLDLTEAHYWGHNHIVYAAPQTVPVQLADLVIDLEHSLRKHRF
HFEQRPYKPHVTLLRNAQWSEASLPAMRTVRWRIEDFVLVHSLSDEQGARYEVLARFPLQ
GGD
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcaaggaaaaagaaacggtcctgcggctgttctttgcgctctggccgaacacg
gtcgaacgtaccgctttggccgcgtggcagccgccgttgcgcgaatcgtgcggggggcgg
gcgatgctgcccgacaccttgcacacgacgctggtattcgtcggcaatgtggccgaacac
cgactggaaacgttgcggttggcagcacaggaggtgagcggccggggattcggactggac
ctgacggaggcgcattactgggggcataaccatatcgtctatgcggctccgcagacggtc
ccggtacagctggccgatctggtcatcgaccttgagcacagccttcgcaaacatcgtttt
catttcgagcaacgcccgtacaaaccgcatgtcaccttgctgcgcaacgcgcaatggagc
gaggcgagcctgccagccatgcgcacggtacgctggcgaatcgaggacttcgtgctggtg
cactcgctgagtgacgagcagggggcacgctacgaggtgctggcacggtttcctttgcag
ggtggcgactga
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