Sideroxydans lithotrophicus: Slit_1274
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Entry
Slit_1274 CDS
T01196
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
slt
Sideroxydans lithotrophicus
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slt03021
]
Slit_1274
Transcription machinery [BR:
slt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Slit_1274
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_16
HTH_23
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ADE11511
UniProt:
D5CRC5
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All DBs
Position
1263783..1264382
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AA seq
199 aa
AA seq
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MGDREVDQQLVERAQRGDKHAFELLVAKYQRRLGRLISRFVRNSAEAEDVTQDAFIKAYR
ALPAFRGDSAFYTWLYRIGINTAKNHLVAQGRRAPTSTPFDADEAEDFEDAALLHEVATP
ENELMSKQVVEVVNSSLQELPDDLRTALTLREIEGLSYEEIAAVMDCPIGTVRSRIFRAR
EAIATNLRPLLGTSEDKRW
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagggaggtcgatcaacaactggtggaacgggcgcaacgcggcgacaagcac
gcgttcgagttgttggtggcaaaatatcagcgtcgactgggccgtctgatttcgcgtttt
gtgcgaaattcagctgaggcagaggatgtcacgcaagatgcgttcatcaaggcatatcgc
gccttacctgcgtttcggggggatagtgcgttttacacttggttgtaccggattggcatc
aataccgcaaaaaaccacttggtggcgcaaggtcgcagagcgcccaccagtacgccgttc
gatgcggatgaggcggaagatttcgaggatgcagcgctgttgcatgaagtggcgacgccc
gagaatgaactgatgagcaagcaagttgtggaagtagtgaactcctcattgcaggaattg
cctgatgatttgcgcacggcattgaccttgcgtgagattgaggggttgagctatgaagag
attgcagcggtgatggattgcccgattggcaccgtcagatcgaggatattcagggcacgc
gaggcgatagcaaccaatttgcgtccattgttaggtacgagtgaagataaaaggtggtaa
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