KEGG   Solanum lycopersicum (tomato): 101248886
Entry
101248886         CDS       T02665                                 
Name
(RefSeq) RNA-binding protein 8A-like
  KO
K12876  RNA-binding protein 8A
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03013  Nucleocytoplasmic transport
sly03015  mRNA surveillance pathway
sly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101248886
  09122 Translation
   03013 Nucleocytoplasmic transport
    101248886
   03015 mRNA surveillance pathway
    101248886
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101248886
   03041 Spliceosome [BR:sly03041]
    101248886
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     101248886
Spliceosome [BR:sly03041]
 Complex C
  Other components
   EJC/TREX
    101248886
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_3 RRM_7
Other DBs
NCBI-GeneID: 101248886
NCBI-ProteinID: NP_001278837
UniProt: K4C7H6
LinkDB
Position
6:complement(40982701..40987123)
AA seq 195 aa
MANPEEAVDFEPEEDDLMDEDVDASSPRAPMPKLKSAITGGGGGSSASKKIKGRGFREET
AEAERNARLSARFDSLDSEGGPGPERSIEGWIILVTGVNEEAHEDDLHNTFGEFGEIKNL
HLNLDRRSGFVKGYALIEYENFEEAERAISEMDGNELLTQTIHVDWAFSKGPFRRRNVRR
RSPRSHRSRSPRRRF
NT seq 588 nt   +upstreamnt  +downstreamnt
atggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaa
gacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggt
ggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagact
gctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggt
ggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgag
gaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttg
catttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaa
aactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcag
actatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggagg
aggtcacctcgtagtcatcgttctagaagtcccaggaggagattctag

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