Solanum lycopersicum (tomato): 101248886
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Entry
101248886 CDS
T02665
Name
(RefSeq) RNA-binding protein 8A-like
KO
K12876
RNA-binding protein 8A
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101248886
09122 Translation
03013 Nucleocytoplasmic transport
101248886
03015 mRNA surveillance pathway
101248886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101248886
03041 Spliceosome [BR:
sly03041
]
101248886
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101248886
Spliceosome [BR:
sly03041
]
Complex C
Other components
EJC/TREX
101248886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
101248886
NCBI-ProteinID:
NP_001278837
UniProt:
K4C7H6
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All DBs
Position
6:complement(40982701..40987123)
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AA seq
195 aa
AA seq
DB search
MANPEEAVDFEPEEDDLMDEDVDASSPRAPMPKLKSAITGGGGGSSASKKIKGRGFREET
AEAERNARLSARFDSLDSEGGPGPERSIEGWIILVTGVNEEAHEDDLHNTFGEFGEIKNL
HLNLDRRSGFVKGYALIEYENFEEAERAISEMDGNELLTQTIHVDWAFSKGPFRRRNVRR
RSPRSHRSRSPRRRF
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaa
gacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggt
ggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagact
gctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggt
ggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgag
gaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttg
catttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaa
aactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcag
actatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggagg
aggtcacctcgtagtcatcgttctagaagtcccaggaggagattctag
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