Solanum lycopersicum (tomato): 101249197
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Entry
101249197 CDS
T02665
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101249197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101249197
Enzymes [BR:
sly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
101249197
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101249197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
FtsK_SpoIIIE
ATP_bind_1
ABC_tran
AAA_29
AAA_24
DUF1611
Motif
Other DBs
NCBI-GeneID:
101249197
NCBI-ProteinID:
XP_004228464
UniProt:
A0A3Q7E9K8
LinkDB
All DBs
Position
1:complement(3257634..3269723)
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AA seq
439 aa
AA seq
DB search
MAYGGTNVNPLAATGGSTTVRQVKLEKECELRVEASADSPLRLRLLTGTAEIFGTEIPPG
IWLNFPPRLKFAVFTWYGATIEMDGSTETDYTADETPMISYINVHAVLDGRRNRAKASPS
DSDTSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCVAASP
IELPIDPVEGIPLEMPMVYFFGHVTPSANIDQYKVLVKELAKTLETQFSGNAESRASGMV
INTMGWIEGVGYELLLHAIDTFNATVILVLGQEKLCSMLKDVLKNRPNVDVVKLQKSGGV
VSRNAKVRQKARGYRIREYFYGPSNDLSPHSNVVNFSDLFIYRIGGGPQAPRSALPIGAE
PAADPTRLVPVSISRDLLHLVLAVSYAKEQDQIISSNVAGFIYVTDVDLHRKKITYLAPC
AGELPSKNLIVATLTWIEN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcttatggaggcacaaatgtcaatccattggcagcaacaggtggttcaacaacagtg
aggcaggtgaagttggaaaaagaatgtgagctccgagttgaagccagcgctgactcgcct
ctccgtcttcggctcctaactggcacggctgagatttttgggactgaaatccctcctgga
atctggctcaactttcctccaagacttaaatttgcagtttttacttggtatggagccaca
atcgagatggacggttccactgaaactgattatacagcagatgagacgccgatgataagt
tatataaatgtccatgctgtacttgatggacgaagaaatcgtgccaaagcttcgcctagt
gattccgacacttctcagggcccaagagttattgttgtgggacctacagattctggcaag
agtactctgtcaaggatgcttcttagttgggctgcgaaacagggatggaaacctactttt
gttgatttggacataggtcaaggatcgataactattccaggatgtgttgctgcttcacca
atcgagttgcctatcgatccagttgaaggaattccacttgagatgcctatggtctacttc
tttggccatgtgactcctagtgccaacatagatcagtacaaggtactcgtcaaggagctt
gctaagactctggagacacaattttctggcaatgctgaatctcgagcttcaggcatggta
ataaatacaatgggatggatagagggagttggttatgagttgctactccatgcgattgat
acattcaatgccacagttattcttgtcttgggtcaggaaaaactttgcagcatgctaaaa
gatgtattgaagaatcgacccaatgtggatgtggtgaaacttcaaaaatctggtggtgtt
gtatcaaggaatgctaaagtacggcagaaagcaaggggctatagaatacgggaatatttt
tatggcccttcgaatgatctttcaccacattctaatgtggtgaacttcagtgacttgttc
atctaccgaatagggggtggaccacaagctccacgctcagctttacctattggtgcagag
cctgctgcagatcctacaagattggttcctgttagtatcagtcgagacttgctccatttg
gttcttgctgtttcatatgccaaagaacaagatcaaataatttccagtaatgttgctgga
ttcatctatgtaactgacgtagacttacacaggaaaaagataacataccttgcaccatgt
gctggagaacttccgagcaaaaacttaattgtggcaaccttaacatggatcgaaaactga
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