Solanum lycopersicum (tomato): 101249951
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Entry
101249951 CDS
T02665
Name
(RefSeq) oligoribonuclease isoform X2
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101249951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101249951
03009 Ribosome biogenesis [BR:
sly03009
]
101249951
Messenger RNA biogenesis [BR:
sly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
101249951
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
RNases
101249951
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
101249951
NCBI-ProteinID:
XP_004246252
UniProt:
A0A3Q7I1Z7
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All DBs
Position
9:16999300..17016764
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AA seq
235 aa
AA seq
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MNQLSNAFSLLNLDVADSQAEITNGDTDRVTGEAQKEVDERVQKLESASGECKLPLVWID
LEMTGLDIEVDKILEIACVVTNGNLTKSIEGPDLVIHQAKLCLDNMGTWCQEHHAASGLT
EKVLKSTVTEEEAEKLVIEFVKRNIGTYTPLLAGNSVYVDFQFLKKYMANLASLFSHVLV
DVSSVKALCLRWYPRDGKKAPKKENKHRAMDDIKESIAELKYYKGHIFKASKSNK
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaactctcaaatgcgttttcattgctgaatttggatgttgcagatagccaagct
gagattactaatggagatactgatagagtaacaggagaagctcagaaagaagtagatgag
cgggttcagaagctagaatcagcttcaggagagtgcaaattgccgcttgtatggattgac
cttgagatgaccggtttggatattgaagttgataaaatattggagattgcttgtgtagtt
acaaatggaaatttgacaaaatcaattgagggtcctgatttggttatacatcaagctaag
ctgtgtctagacaatatgggaacatggtgccaagagcatcatgcagcgagcggtttgact
gagaaggtccttaagagtacagtcaccgaagaagaagctgaaaaactggttattgaattt
gtgaagagaaatattggcacatatacaccattactagcaggaaattcagtctacgtggat
tttcaatttttgaagaaatatatggcgaatctggctagtctattttcacatgtacttgtt
gatgttagcagtgtcaaggcattgtgtcttcgttggtatccaagagatggaaaaaaggca
cctaaaaaggaaaacaagcacagagctatggatgacattaaggagagcatagcagaactc
aaatactacaagggacacatatttaaagcatccaagtccaataagtaa
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