Solanum lycopersicum (tomato): 101254355
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Entry
101254355 CDS
T02665
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101254355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101254355
03019 Messenger RNA biogenesis [BR:
sly03019
]
101254355
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101254355
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101254355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
101254355
NCBI-ProteinID:
XP_004233145
UniProt:
A0A3Q7F3L4
LinkDB
All DBs
Position
2:complement(40557459..40572100)
Genome browser
AA seq
671 aa
AA seq
DB search
MDDGEGGLNFDFEGGLDTGPTHPTASVPVIQAGPAPNASVAVVPPGGGVGLGGDGSFVGN
RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI
KECNMFKLGFCPNGPDCRYRHAKMPGPPPPVVEVLQKIQNLTSHGYSNRFFQNRNTNYST
QADKSQIPQVPNVMNQAVKSTATEPPIGQPHQPHQQQVQQPQHQGPPTQTQTLPGTQQNQ
AAIPLPQGPSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSINR
TRHFQGLAKMTSRIGGAAKGGNWKHEHGTAHYGRNFSVKWLKLCELSFQKTRHLRNPYNE
NLPVKISRDCQELEISVGEQLASLLYVEPDSELMAISLAAESKREEERAKGVNPDNGNEN
PDIVPFEDNEEEEEEESEEEDEEDEGFGQALGPAALDRGRGRGIVWPPLVPFRGARPFPG
MRGFPPGIMSDGFSYGSMTPDGFPMPDPYGMGGRPFGPFGPRFPGDMMFHSRPPAAGGFG
MMMGPARPPFMGGMGPGAPGPPRGGRPMGMHPSFTPPPPPPSQNPRVKKDQRAPFNERND
RFSSGPDQGRGQETAGSVVGPDEGVHYPQTENSFRNDESESEDEAPRRSRHGDGKKKKNS
MDGDATTGTEK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggatgacggagaaggaggactaaactttgattttgaaggtggcttagatacagggcca
acacacccaactgcatctgtaccagtaatacaagcaggtcccgccccaaatgcttctgtt
gccgtagttcctccaggcggcggtgtggggctaggaggtgatggttcatttgttggtaac
cgtagaagtttcaggcagactgtttgtaggcattggctgcggtccttgtgtatgaagggt
gatgcttgtggtttccttcaccagtatgataagtcccggatgcccgtttgcaggttcttt
agactctatggagagtgccgtgaacaagattgtgtttataagcacaccaatgaggatatt
aaagaatgtaacatgtttaaattaggattttgtccgaatggtcctgattgccgatataga
catgcaaagatgcctggacctccacctccagtggtagaagttcttcagaaaattcagaat
ttgacatcccatggttactcgaacaggttttttcaaaatcggaatacaaattattcaact
caggcagacaaatctcaaattccgcaagtacctaatgtaatgaatcaagcagtgaaatct
acagcaacggaaccacccattggccaaccgcaccagccgcatcaacaacaagttcaacag
cctcaacatcaggggcccccaactcaaacacaaacccttcccggcacccagcaaaatcag
gctgcaatacccctgcctcaaggaccatctaggtactttatagttaaaagctgcaaccgt
gagaatcttgaattgtcagtacaacaaggagtttgggcaactcaacgaagcaatgaggct
aaactaaatgaagctttcgactctgtggaaaatgtcattctaattttttcaatcaatcgg
accaggcattttcagggtctcgcaaaaatgacatctagaattggtggtgctgctaaagga
ggaaattggaagcatgaacatggaactgcacattatggacggaatttttcagtgaaatgg
ttaaagttgtgtgaactatccttccagaaaactcgtcatttgaggaatccatacaatgag
aacttacctgtgaagattagcagagattgtcaagaattagagatctctgttggtgagcag
ttggcttctttgctctatgtggaaccagacagtgaacttatggcaatctcactagctgca
gaatccaagcgagaggaggaaagagcaaagggagtaaaccctgataatgggaatgagaac
ccagatatcgtaccttttgaagacaatgaagaagaggaagaagaagaaagtgaagaggag
gatgaggaggatgagggctttggccaagctttaggaccagctgctttggacagaggaagg
ggtaggggaatcgtatggcctcctctagttccttttcgtggagccaggcctttccctggg
atgcggggcttccccccaggcattatgagtgatggattttcttatggatcaatgacacct
gatggttttcctatgcctgatccttatggaatgggtggccgaccttttggaccatttggc
cctcgattccctggtgatatgatgtttcacagccgtcctccggctgctggtggatttggg
atgatgatgggtccagcaaggccccctttcatgggtggaatgggtcctggagcacctggc
ccacccagaggtggtcgaccaatgggaatgcatccatcatttacaccacccccaccaccg
ccctctcaaaatcctcgggtcaaaaaggatcagcgagctccttttaatgaaaggaacgat
agattcagttcaggtccagaccaaggtaggggtcaagagactgcaggctcagttgttgga
ccagatgaaggagtacattatccacaaactgaaaacagctttagaaatgatgaaagcgag
agcgaggatgaagcccctagaaggtccagacatggtgatggaaagaaaaagaagaatagc
atggatggagatgctactactggcacagaaaagtaa
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