KEGG   Solanum lycopersicum (tomato): 101262281Help
Entry
101262281         CDS       T02665                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03030  DNA replication
sly03410  Base excision repair
sly03420  Nucleotide excision repair
sly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101262281
   03410 Base excision repair
    101262281
   03420 Nucleotide excision repair
    101262281
   03430 Mismatch repair
    101262281
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sly03032]
    101262281
   03400 DNA repair and recombination proteins [BR:sly03400]
    101262281
Enzymes [BR:sly01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101262281
    6.5.1.6  DNA ligase (ATP or NAD+)
     101262281
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     101262281
DNA replication proteins [BR:sly03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    101262281
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     101262281
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     101262281
   NER (nucleotide excision repair)
    Other NER factors
     101262281
   MMR (mismatch exicision repair)
    Other MMR factors
     101262281
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 101262281
NCBI-ProteinID: XP_004250982
UniProt: K4D9P5
LinkDB All DBs
Position
11
AA seq 802 aa AA seqDB search
MLCLSSYRFTQTTLLYNFSVKPSSIFLHFYKKKQLTLKPLFFSVNPNSNSRTMSDSPPAP
PRSAFAVLMANSKKKTTSSSPKKRKTPDVETSSKSPVVNQDSVLKPIKDTDLVNESKSEE
LEVKKRSQDSTLKPIEDTHLVNESKSEECVVKKRKMISPDESIVEIKKKAANFDPRKAVY
WGDGQRVPFMFVVKAFDAISKESGRIVITEIVTNMLRTVIETTPEDLLPVVYLAANKIAA
AHDGMELGIGDASIIKALAEACGAKEAHIKKQYKELGDLGLVAKASRSSQPLMHKPEALT
VAKVFDTFRIIAKESGKDSQEKKKNYIKSLLVAATDCEPQYLIRLLQTKLRIGLAEQTLL
VAIAHAFVYSDKHSSPPAGVDSPLEEAAKIVKQVYSVIPVYEKIIPALLADGVWKLSETC
GFSPGVPVGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAE
RNTGKFPDVVTAISRLKKSSATSFVLDCELVAYDREKQKILPFQVLTTRARKNVVISEIK
VNVCIYAFDILYLNGQPLLQEQLNVRREHLYKSFEEEPGYFQFATAVTSNDLEEITKFLE
DAVNGSCEGLIIKTLTKDATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRT
GVYGAFLLACYDSNNEEFQSICKIGTGFSELQLEERSSSLRSKVIPKPKSYYRYGETINP
DVWFEPTEVWEVKAADLTISPVHRAAQGIVDPAKGISLRFPRLSRVREDKKPEEASSAEM
VADMYNAQKHNQKNNQDDNDED
NT seq 2409 nt NT seq  +upstreamnt  +downstreamnt
atgttgtgtttgagttcatatcgtttcactcaaactactcttctttacaatttctccgtt
aaaccttcttcaatctttcttcatttctacaagaagaagcagttaactctcaaacccctt
ttcttctctgtaaaccctaattcaaattcaagaaccatgtctgattctcctcctgctcct
cctcgctctgcgtttgctgtacttatggcaaattccaagaagaaaacaacctcctcctca
cctaagaaacgtaaaaccccagatgttgaaacttcaagtaaaagccctgttgttaatcaa
gattcagttttgaagccaattaaggacaccgatttggtcaatgagtcgaaaagtgaggag
ttggaggtgaagaaacggagtcaagactcaactttgaagccaattgaggacacccatttg
gtcaatgagtcgaaaagtgaggagtgtgtggtgaagaaacggaaaatgattagtccagat
gagagcattgtggaaataaagaaaaaagctgcgaactttgatccaagaaaggctgtgtat
tggggagatggtcagagagtgccgttcatgtttgtagttaaggcgtttgatgcaatttca
aaggagtcagggcggattgtgatcactgaaattgtgactaatatgttgaggactgtgatt
gagacgacgcctgaggatttgttgcctgttgtgtaccttgctgctaataagattgcagct
gcacacgatgggatggagcttggtattggtgatgcttccattatcaaggcacttgctgaa
gcctgtggtgctaaagaagcacatatcaagaagcaatacaaggagcttggagatttgggc
cttgttgcaaaagcaagtcgttcatcacagcctctgatgcataaaccagaagcactgact
gttgccaaagtttttgacacatttcggatcattgccaaggaatctggaaaggatagtcag
gaaaagaaaaagaattacattaaatcactgcttgttgcagccactgattgtgaaccccaa
tatttgattcgtcttctccagacaaagctacgcattggtttggctgaacaaacactgtta
gtcgcaatagctcatgcttttgtgtactcagataagcattcatcacctcctgcaggtgta
gattctcctttggaagaggctgccaagattgttaagcaagtgtactctgtgattccagtt
tatgaaaaaattatccctgctcttctagctgatggtgtttggaagctttcagaaacatgc
ggtttctcacctggtgttcctgttggacctatgctagctaagccaaccaaaggagtatct
gaaattcttgataagtttcaggatatggagttcacatgtgaatacaagtatgatggtgaa
cgtgcccagatacactacatggaagatggttccgttgagatatacagccgaaatgcagaa
agaaatactggaaagtttcctgacgttgttactgctatctcaagattgaagaaatcatct
gcaacttcatttgttcttgactgtgaactggttgcatacgaccgtgagaaacagaagatc
ctgccctttcaggtccttactacacgtgctcgtaaaaatgttgtcattagtgaaatcaag
gtcaacgtgtgcatatatgcttttgatatcttgtatcttaatggacaaccacttcttcaa
gagcaacttaatgttcgcagagagcatctttacaagtcatttgaagaagaacctggatat
ttccagtttgctacagctgtaacctcaaatgatcttgaggaaataacaaaatttcttgaa
gatgcggtcaacggcagttgtgagggattgattatcaaaacactaactaaagatgctaca
tatgagccttcaaagcggtcaaataactggcttaaactgaagaaggactacatggagagt
attggcgactcactggatctggtaccaattggtgcttttcatggtcgggggaaacgtact
ggtgtttacggagcctttctcctagcttgttatgatagcaacaacgaggagtttcagagc
atctgtaaaatcggaactgggttttctgaattacagcttgaggaacgctcttccagcctt
cgttctaaagttattcctaaaccaaagtcatattacaggtatggggaaaccatcaatcca
gatgtttggtttgaacctaccgaggtctgggaagtgaaagctgctgatcttactatcagc
cctgtccaccgtgctgcccaaggtatcgtggatcccgcgaagggaatttcattacgattt
ccacgtctgagccgtgtacgagaagacaagaagcctgaggaggcctcatcagcagagatg
gtagcggatatgtataacgctcagaagcacaatcaaaaaaacaatcaggatgacaacgat
gaagactaa

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