Solanum lycopersicum (tomato): 543547
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Entry
543547 CDS
T02665
Symbol
COP1
Name
(RefSeq) putative E3 ubiquitin-protein ligase COP1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04120
Ubiquitin mediated proteolysis
sly04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
543547 (COP1)
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
543547 (COP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sly04121
]
543547 (COP1)
Enzymes [BR:
sly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
543547 (COP1)
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
543547 (COP1)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
543547 (COP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
WD40_like
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-RING_UBOX
U-box
DUF1664
zf-RING_5
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
543547
NCBI-ProteinID:
NP_001234047
UniProt:
A0A3Q7J232
Q9ZTV4
LinkDB
All DBs
Position
12:complement(575993..587885)
Genome browser
AA seq
677 aa
AA seq
DB search
MVESSVGGVVPAVKGEVMRRMGDKEEGGSVTLRDEEVGTVTEWELDRELLCPICMQIIKD
AFLTACGHSFCYMCIVTHLHNKSDCPCCSHYLTTSQLYPNFLLDKLLKKTSARQISKTAS
PVEQFRHSLEQGSEVSIKELDALLLMLSEKKRKLEQEEAERNMQILLDFLQMLRKQKVDE
LNEVQHDLQYIKEDLNSVERHRIDLYRARDRYSMKLRMLADDPIGKKPWSSSTDRNFGGL
FSTSRNAPGGLPTGNLTFKKVDSKAQISSPGPQRKDTSISELNSQHMSQSGLAVVRKKRV
NAQFNDLQECYLQKRRQLANKSRVKEEKDADVVQREGYSEGLADFQSVLSTFTRYSRLRV
IAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADAHCPVVEMS
TRSKLSCLSWNKYTKNHIASSDYDGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSM
LVSGSDDCKVKVWCTKQEASVLNIDMKANICCVKYNPGSSVHIAVGSADHHIHYYDLRNT
SQPVHIFSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTLRGHTNEKNFVGL
SVNNEFLSCGSETNEVFVYHKAISKPVTWHRFGSPDIDEADEDAGSYFISAVCWKSDSPT
MLAANSQGTIKVLVLAA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaagttcagttggaggggtggtgccagcagtgaagggggaggtgatgaggagg
atgggggacaaagaggaggggggtagtgtaactctaagggatgaagaagttgggacagtg
acagaatgggaattggacagggaattgttgtgtcctatatgtatgcagatcataaaggat
gcatttttaacagcttgtgggcacagtttttgctatatgtgcatagttactcatcttcac
aacaagagtgattgcccctgttgttctcattatctcactaccagtcaactctatcccaat
ttcctacttgacaagctattgaagaagacatctgcccgtcagatttcaaaaactgcatcc
cctgttgaacagtttcgtcattcattggaacagggttctgaagtgtcaattaaggagctg
gacgctctattgttgatgttgtcagagaaaaagaggaaattggaacaggaggaagcagag
cgaaatatgcaaattctgctagacttcttacagatgttaaggaagcaaaaagttgatgaa
ctcaatgaggtgcaacatgatctgcaatacatcaaagaggacttaaattcagtagagaga
catagaatagacctataccgggctagggaccggtattcaatgaagctccgaatgttagca
gatgatcctattgggaaaaaaccttggtcttcatcaactgataggaactttggtggtctt
ttctccacttcacgaaatgcacctggaggattaccgactggaaacttgacattcaaaaag
gtggacagcaaagctcaaataagctctcctggaccacagagaaaagatacttcaatcagt
gaactgaactcacaacatatgagtcaatcaggtctggctgtggttaggaagaagcgtgtc
aatgcacagttcaatgatctccaagaatgttacttgcaaaagagacgtcaattggcaaac
aaatcgcgagttaaggaagaaaaggatgcagatgtcgtacaaagagaaggttacagtgaa
ggactagcagattttcagtctgtacttagcactttcactcgttatagtcggttaagagtc
attgctgaacttcggcatggggatctgtttcactcggccaatattgtttcaagcattgaa
tttgatcgggatgatgagttgtttgctactgctggagtttcacggcgtataaaagttttt
gacttctcttcagttgtaaatgaacctgcagatgcacactgccctgttgttgaaatgtct
acccgatctaagctgagctgcttgagttggaataagtataccaagaaccacatagctagt
agtgattatgatggaatagtaactgtatgggatgtgacgactagacagagtgtgatggaa
tatgaagagcatgagaaacgggcttggagtgttgatttttcacgcacagaaccctcgatg
cttgtatctggcagtgatgattgtaaggtcaaagtttggtgcacgaagcaggaagcaagt
gttcttaatattgacatgaaggcaaatatatgctgtgtaaaatataatcctggatctagt
gttcatatagcggttggctctgcggatcatcatattcattattatgacttgaggaacacc
agccagccggttcacatttttagtggccatagaaaagctgtttcatatgtaaaatttttg
tccaacaatgaacttgcttcagcatcaacagacagtactctacgattgtgggatgtaaaa
gataatttgccggttcgcacgcttagaggacatacgaatgagaagaactttgttggtctc
tcagtgaacaatgaattcctgtcatgtggcagtgaaacaaatgaagtattcgtgtaccat
aaggcgatatccaaacccgtgacttggcatagatttggttccccagacatagacgaagcg
gatgaagatgcaggatcttatttcatcagcgcagtgtgctggaagagcgatagccctacg
atgctagctgctaatagccagggaactataaaagtgttagtccttgcagcttga
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integrated database retrieval system
