Shewanella maritima: EXU30_01345
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Entry
EXU30_01345 CDS
T06365
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smai
Shewanella maritima
Pathway
smai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXU30_01345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smai03019
]
EXU30_01345
03009 Ribosome biogenesis [BR:
smai03009
]
EXU30_01345
Enzymes [BR:
smai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EXU30_01345
Messenger RNA biogenesis [BR:
smai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EXU30_01345
Ribosome biogenesis [BR:
smai03009
]
Prokaryotic type
rRNA processing factors
EXU30_01345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QBF81490
UniProt:
A0A411PDN9
LinkDB
All DBs
Position
290772..294131
Genome browser
AA seq
1119 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIIQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERSELKAAMSELEVPQGMGLIVRTAGVGKDAAEL
KWDLKVLQHHWEAIQEAANSKPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFDEA
KQHIGLVRPDFVERVKRYESEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSPVRHQREVEN
RMRDAVHSDRARVQLGRISRFGLMEMSRQRLRPSLEESAGHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTKQIEAVVPVDVAAYLLNEKRKAIRITEQRHDVEVYVIPDRHMETP
EYRVVRRKADDEVTETSYKRVEQPENKLYEPRKLERAAAPEPAIKGFGAPKQTPAKPAAK
PAKAKAEEKPGLFSRIFSAIASLFGSEEEKSDNKDKNKGKKGGQQNRRNRRNERQDNRND
KRRKRGESNAKDGNDNRSRKNADRNADRNERNKGKADQDENKRNKSADKANRNSKPKRDN
VEKSPKQEAARERRQRRNMRRKVRIENEATNNEQTQAALATEEANVKATVEAQVTEKPAA
DTQNSEGQAAPKAKEQKSTRTRRPRKERVKKVEQETEQAAETLEVATEAKAETVEQPSVA
VEAKAESVEVSQATAEAATTEKAEAATTDKAETTGEDKAEDGKREGQRRSRRSPRHLRAA
GQRRRRDDEDTAQAPVFTPVDELEKQLDAENNSATSEAQAPSTSEAPSKSEAKVDAPAPE
AVIEAPTTETVVDAPAAEPVVEVAAETVTEVVVETETPAEAPVEKPATEKVVEAPAEVKE
PVVEAPVVEAKVEAPAETPATEKVAEAPTEQAVEAPVSTASAEPAKPASALASNASAPMA
KPAAIKPPKAQDKAEVAAESNETPVESEGNSVSAPAAKPTASRFGSMVGSEMAKPSVEVR
AAQQTPQGKDYASAQAPAAKPAKSMTANSASSDMARPGQ
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttaatcaatgcaactcaatcagaagagttgcgtgtagcccttgttgac
gggcaacaactgtacgatctggatattgaaagcccaggtcatgaacagaaaaagtcaaac
atctacaaaggtaaaatcacccgtgttgaaccatcactagaagcagcttttgttgactat
ggtgctgagcgtcacggcttcttaccacttaaagaaatcgctcgcgaatacttccctaaa
ggttactctttccaaggccgtccaaacatcaaagaagtggtgtctgaaggtcaggaagtt
atcatccaaattgataaagaagaacgtggcaacaaaggtgctgcactaacaacctttatt
agccttgcgggttcttacctggtcctcatgccaaacaaccctcgcgcaggcggtatttct
cgtcgaatcgaaggtgatgaacgtagcgagcttaaagctgcaatgtcagagcttgaagta
ccacaaggtatgggcttaattgttcgtacagccggtgtaggtaaagatgcagctgagcta
aagtgggaccttaaagttctacaacatcactgggaagcgattcaagaagcggctaacagc
aagcctgcgcctttcttaatccatcaggaaagtaacgtcattgtacgtgcaattcgcgat
tacttacgccgtgatgttggtgagatcttaattgaccacccacgtatctttgacgaagct
aagcaacacattggattagtgcgccctgactttgtagagcgtgtaaaacgctatgagtcg
gaagtaccgctatttactcactaccaaattgagtcgcaaattgaatcagcattccaacgt
gaagtgcgcctgccatcaggtggctcgattgttatcgacccaactgaagcattaacttca
atcgatattaactctgcccgcgcaactaaaggcggcgatatcgaagagacggcactcaac
actaacttagaagccgctgatgaaattgctcgtcaattacgtctgcgcgacctaggtggt
ctagtggttatcgactttatcgatatgtcaccagttcgccaccaacgtgaagttgaaaac
cgcatgcgtgatgctgtccacagtgaccgtgctcgcgttcaacttggtcgtatctcacgc
tttggtttaatggaaatgtcgcgccagcgtctgcgcccttctcttgaagagtctgcaggt
cacctgtgtcctcgttgtcacggtcaaggcactattcgcggcactgaatctctagcactg
tctattcttcgcttaatggaagaagaagcaattaaagagaacaccaagcaaattgaagcg
gtagtacctgttgatgtagcggcttacctgcttaacgaaaagcgtaaagcaatccgcatt
actgagcagcgtcatgacgttgaagtgtacgtgatcccagaccgtcacatggaaacgcca
gaatatcgcgtagtacgtcgcaaagctgacgatgaagtgactgaaacgagctacaagcgc
gttgaacagccagaaaacaagttatacgaaccacgtaaacttgagcgtgcagcagcgcct
gagccagcaatcaaaggctttggtgcacctaagcaaacgccagctaaaccggcagctaag
cctgcgaaagctaaggcagaagaaaagccaggtttattcagtcgcatcttcagtgctatt
gcctcgctatttggcagcgaagaagaaaagtctgacaacaaagacaagaacaaaggtaaa
aaaggcggtcagcaaaatcgtcgtaaccgtcgtaacgagcgccaagataaccgtaatgac
aaacgtcgtaagcgtggtgagtcgaatgcaaaagacggtaatgacaaccgttcacgcaaa
aatgctgatcgtaacgctgatcgcaatgagcgtaataaaggtaaagctgatcaagacgag
aacaagcgtaataagtctgctgacaaagctaaccgcaacagcaagccaaagcgtgacaac
gtagaaaagagccctaagcaagaagcggctcgcgagcgtcgtcaacgccgtaatatgcgc
cgtaaagttcgcatcgaaaacgaagcgactaataacgagcaaacacaagctgcgctagca
actgaagaagcaaacgtaaaagcgactgtcgaagcgcaagttacagaaaagccagcggct
gacactcaaaacagcgaaggccaagctgcgccaaaagctaaagagcaaaagtcaactcgt
actcgccgtcctcgtaaagagcgcgtgaaaaaagttgagcaagaaactgagcaagcggct
gaaacgttagaagtagcaacagaggctaaagcagagactgttgaacaacctagtgttgct
gttgaagctaaagctgaaagcgtagaggtttctcaagcgacagcagaagctgcaaccaca
gaaaaagctgaagcggctactacagacaaagctgaaacaactggggaagataaagctgaa
gacggtaagcgtgaaggtcagcgtcgtagccgtcgcagccctcgccacctgcgtgcagca
ggccagcgccgtcgccgtgacgatgaagataccgctcaagcaccagtgtttactccggta
gatgaacttgaaaagcaacttgacgcagaaaacaactcagcgacaagtgaagcacaagct
ccaagtacatcagaagcaccaagtaaatctgaggctaaagtagacgcgcctgctcctgaa
gctgtaattgaagcaccgacaactgaaacggttgttgatgcgccagctgcagagcctgtt
gttgaagtagctgctgaaaccgtaactgaagtggttgttgaaacagaaacacctgctgaa
gcacctgttgaaaagccagcaaccgaaaaggtagttgaagcacctgctgaagtgaaagag
ccagtggttgaagctccagttgttgaagcaaaagttgaagcgccagctgaaactccggct
actgaaaaggtcgctgaagcgccaactgagcaagctgttgaagcgcctgtatcaacagca
tcagcagagccagcaaaacctgcgagtgcgctagcatctaacgcatctgcacctatggct
aagccagcagcgattaaaccgcctaaagctcaagacaaagccgaagtagcggcagagtca
aatgagactccagttgagagtgaaggcaacagcgtgtcagccccagcagcgaaaccaact
gcgagtcgatttggctctatggttggctcagaaatggctaagccaagtgtggaagtgcgc
gctgcgcaacaaacaccacaaggtaaagactatgcaagtgctcaagcacctgcggctaaa
ccagctaaatcgatgacagcaaacagcgcgtcatcagatatggctcgccctggtcaataa
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