KEGG   Streptomyces malaysiensis: SMALA_3993Help
Entry
SMALA_3993        CDS       T05189                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
smal  Streptomyces malaysiensis
Pathway
smal03030  DNA replication
smal03410  Base excision repair
smal03420  Nucleotide excision repair
smal03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SMALA_3993
   03410 Base excision repair
    SMALA_3993
   03420 Nucleotide excision repair
    SMALA_3993
   03430 Mismatch repair
    SMALA_3993
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smal03032]
    SMALA_3993
   03400 DNA repair and recombination proteins [BR:smal03400]
    SMALA_3993
Enzymes [BR:smal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SMALA_3993
    6.5.1.6  DNA ligase (ATP or NAD+)
     SMALA_3993
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SMALA_3993
DNA replication proteins [BR:smal03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SMALA_3993
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SMALA_3993
DNA repair and recombination proteins [BR:smal03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SMALA_3993
   NER (nucleotide excision repair)
    Other NER factors
     SMALA_3993
   MMR (mismatch exicision repair)
    Other MMR factors
     SMALA_3993
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase DUF3341 EII-Sor
Motif
Other DBs
NCBI-ProteinID: ATL84226
UniProt: A0A291STK7
LinkDB All DBs
Position
complement(5062880..5064418)
Genome map
AA seq 512 aa AA seqDB search
MLLADVARTSRQVAATSARSEKIAALARLFQRTEPAEAAVVITYLAGKLPQRRTGVGWST
LRHRREPAAEPTLTVLDVDEALSRVAAVSGSGATAARKRLVGELLSAATKEEQGFLLGLI
GGELRQGALEGLAVEGLAEAVGAPAAEVRRAVMLGGSLGAVAGALLARGPQALADFRLEV
GRPVLPMLAQSAKDLDEAMDRLGPCAVEEKLDGIRVQVHRDGADVRIYTRTLDEITDRLP
EVVTAARELAVDRAILDGEVILLDAEGRPRPFQETSGRVGSRLDVPGASAALPLSPVFFD
LLVVDDRDLLDLPAHERHAELARITPGPRRVRRLVADDPADPQTRRAAREFAADVLARGH
EGVLVKALEAPYGAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARAADG
TYLMLGKTFKGLTDAMLEWQTEALLGIAVSDDGWVVRVRPELVVEVAFDGLQRSSRYPAG
VTLRFARVLRYREDKPADQADTVETVLALRGG
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctgctggctgatgtcgcgcggacctcccgccaggtcgcggccacctccgcccgctcg
gagaagatcgccgcgctggcccggctgttccagcgtacggaaccggccgaagcggccgtg
gtgatcacctacctcgcgggcaagctgccccagcgccgtaccggagtgggctggtccacc
ctgcgccaccggcgggaacccgccgccgagcccacgctgacggtgctcgatgtggacgag
gccctgagccgggtcgcggcggtctccggcagcggtgcgacggcggcccgcaaacggctg
gtgggcgagctgttgtccgccgcgaccaaggaggagcagggctttctgctcggcctgatc
ggcggcgagctgcggcagggggcgctggagggactggccgtggaggggctcgccgaggcg
gtgggcgcaccggccgccgaggtgcggcgggcggtgatgctcggcggatcgcttggcgcg
gtcgcgggggcgctgctggcgcgcggcccgcaggcgctggccgacttccggctcgaggtg
gggcggccggtgctgccgatgctcgcgcagagcgccaaggacctcgacgaggccatggac
cggctggggccgtgcgcggtcgaggagaagctggacgggatccgggtgcaggtgcaccgg
gacggcgcggacgtacggatctacacccgtaccctcgacgagatcaccgaccggctgccg
gaggtcgtcacggccgcgcgggagctggcggtggaccgggcgatcctcgacggcgaagtg
atcctgctggacgccgagggacggccccggccgttccaggagacctccggacgggtcggc
tcccggctcgatgtgcccggggcgtcggccgcgctgccgctgtcccccgtcttcttcgat
ctgctcgtggtggacgaccgcgatctgctcgacctcccggcccatgagcgccatgccgaa
ctggcccggatcacccccgggccccggcgggtgcggcggctggtggccgacgacccggcg
gatcctcaaacccggcgggcggcacgggagttcgcagcggacgtgctggccaggggccat
gagggggtgctggtcaaggcgctggaggcgccgtacggcgcgggccggcgcggggcgtcc
tggctgaaggtcaaaccggtgcacaccctcgacctggtggtgctggcggcggagtggggg
cacggccgccgcaccgggaagctgtccaacctccatctgggcgcacgggcggcggacggc
acgtatctgatgctgggcaagaccttcaaggggctcaccgacgcgatgctggagtggcag
acggaggcgctgctgggaatcgcggtcagcgacgacggctgggtggtgcgggtgcggccg
gagctggtggtggaggtggccttcgacgggctccagcgctcgtcccgctatccggcgggc
gtcacactgcggttcgcgcgggtgctgcgctaccgggaggacaagcccgcggatcaggcg
gacacggtcgagaccgtgctggcgcttcgcggcgggtga

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