Serratia marcescens SM39: SM39_3417
Help
Entry
SM39_3417 CDS
T03592
Symbol
recB
Name
(GenBank) exonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SM39_3417 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_3417 (recB)
Enzymes [BR:
smar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SM39_3417 (recB)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SM39_3417 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BAO35378
LinkDB
All DBs
Position
complement(3524064..3527615)
Genome browser
AA seq
1183 aa
AA seq
DB search
MTETAPQRLEPLTLPLFGERLIEASAGTGKTFTIGALYLRLLLGLGGEAAFPRPLTVEEI
LVVTFTEAATEELRGRIRDNIHGLRIACVRGVSANPLFSALMAEIDDLTDAASQLLAAER
QMDEAAIYTIHGFCQRMLTHNAFESGMLFEQTLVQDELPLRRQACADFWRRHCYPLPLGV
ARAVSQEWSGPEALLADLSGYLHGEAPALRRPPKDEETVLMRHEQIVARIDAIKAQWRAA
AGDLEALIAQSGVDKRSYSSKHLPNWLNKVGEWSGQETQDYQLPKELDKFRQSVLLDKTK
KGEPPRHALFTAIDELFDEPLTLRDLIMARALSEIRTSIQQEKRQRAELGFDDLLSRLDG
ALQSGGGEQLAQAIRQRYPVAMIDEFQDTDPQQYRIFQKLYVGRPDCGLLLIGDPKQAIY
AFRGADIFTYMRARSEVSAHYTLETNWRSSPSMVASVNHLFSQVEKPFLFGQIPFIEVSA
AEKNQGLAFDLHGKPQPAMQFWLQQGEGAGVSDYQQLMARLCATQIRDWLSAGQQGQAWL
QGGKEPRPVQASDITVLVRSRNEAALVRDALSALSIPSVYLSNRDSVFDTPEAKDLLWLL
QAVLAPEQERTLRSAMATGLMGLDAPTLDGLSRDERAWDELVNEFDDYRTLWLRRGVLPM
LSEVMKARQLAENLLASAGGERRLTDVLHLGELLQEAAAQLDSEHALVRWLAQQIAQPNR
QSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQALYHDRHSFQALLDL
DANEESQAWAEEERLAEDLRLLYVALTRSVYHCSIGIAPLFQGTRKKQGDTDLHRSALGY
LVQGGQAGDAAYLQERLQQLAGGGIALSLVEPPDEAPWQPQASLAATLAAKSFTRRIQDF
WRVTSYTGLQQHGSSLMQDLLPRLDVDAAGERGEESEPALTPHTFPRGATPGTFLHSLFE
TLDFTQPLDEQWLLAQLQQQGFAEHWQPILLAWMQVLLNTPLAASGVTLSALTPQHKQAE
LQFYLPINRLLQAKALDALVKRYDPLSARCPALDFHQVQGMLKGFIDLVFCWQGKYYLLD
YKSNWLGEDSSAYTRPAMEQAMAEHRYDLQYQLYTLALHRYLRHRLTDYDYRRHFGGVIY
LFLRGVDAAHPGNGIFTCLPELELVEGMDRLFSGEAAATEEGS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaactgccccgcagaggctggagccgctgacgctgccgctgttcggcgaacgc
ctgattgaggcgtcggcgggcaccggcaaaacctttaccatcggcgcgctgtacctgcgt
ttgctgctggggctgggcggtgaagcggcgtttccccggccgctgacggtcgaagaaatc
ctggtggtgacctttaccgaggccgccaccgaggagctgcgcgggcgtatccgcgacaat
atccacgggctgcgcatcgcctgcgtgcgtggcgtcagcgccaacccgctgttttcggcg
ctgatggctgaaattgacgatttgaccgacgccgcctcgcagctgctggcggcggagcgg
cagatggacgaagcggcgatctacaccattcacggcttttgccaacgaatgctgacgcac
aacgccttcgaatccggcatgctgtttgaacaaacgctggtgcaggacgagttgccgctg
cggcggcaggcctgtgccgatttctggcgtcgccactgctatccgttgccgctgggcgtg
gcgcgtgcggtcagccaggagtggagcggcccggaagcgttgctggccgatctttccggc
tatctgcacggtgaggcgccggcgctgcgtcggccgccgaaggatgaagaaaccgtcctg
atgcgccacgagcagatcgtcgcgcgcatcgacgccatcaaggcgcaatggcgggcggcg
gcgggcgatctggaggcgctgatcgcccagtcaggcgtcgataagcgcagttacagcagc
aagcacctgccgaactggctgaacaaggtcggcgaatggagcgggcaggagactcaggac
taccagttgccgaaggaactggataaatttcgccagtcggtgctgctggataagaccaag
aaaggcgagccgccgcggcatgcgctgttcacggcgatcgacgagctgttcgatgaaccc
ttgacgctgcgcgacctgatcatggcgcgcgcgctcagcgagatccgcacttccattcaa
caagaaaagcgccagcgcgccgagctggggtttgacgacctgctcagccggctggacggc
gccctgcaaagcggcggcggcgaacagctggcgcaggcgatccgccagcgttacccggtg
gcgatgatcgatgaattccaggataccgatccgcagcaataccgcattttccaaaaactt
tacgtcggccggcccgattgcggcctgctgttgatcggcgatcccaagcaggcgatttac
gccttccgcggtgccgacatctttacctacatgcgggcgcgctcagaggtgagcgcccac
tatacgctggagaccaactggcgctcgtcgccgtcgatggtcgccagcgtcaatcacctg
ttttctcaggtagaaaagcctttcctgttcggccaaatcccctttatcgaggtcagcgcg
gcggaaaagaaccaagggttggcgtttgacctgcacggcaagccgcaaccggcgatgcag
ttctggctgcagcagggggaaggcgccggtgtaagtgattaccaacagctgatggcgcgc
ctgtgcgccacgcaaattcgcgactggctcagcgccgggcagcagggccaggcgtggctg
cagggcggcaaggagccaaggccggtacaagcttccgatatcacggtgctggtgcgcagc
cgcaatgaggcggcgctggtgcgcgatgcgctgagcgcgctgtccattccgtcggtctac
ctgtctaaccgcgacagcgtgttcgacaccccggaggccaaagacctgctgtggttgctg
caggcggtgttggcgccggagcaagagcgcacgctgcgcagcgccatggccaccgggctg
atggggctggacgcgccgacgctggacggcctgagccgcgatgagcgtgcctgggacgag
ctggttaacgaattcgatgattaccgcacgctctggctgcgccgcggcgtgctgccgatg
ctgagcgaggtgatgaaagcgcgccagctggcggagaacctgctggccagcgccggtggc
gagcgtcgtttgaccgacgtgctgcatctgggggagttgttgcaagaggcggcggcgcaa
ctcgacagcgaacatgcgctggtgcgctggctggcacagcagatcgcccagcctaatcgc
cagtccgataatcagcaactgcggctggagagcgaccggcatctggtgcaggtgatcacg
attcataaatccaaggggctggagttcgatctggtgtggctgccgttcgtcggcaatttc
cgccagcagcagcaggcgctgtatcacgatcgccacagtttccaggcgttgctggatctc
gacgccaatgaagagagccaggcctgggcggaggaagagcggttggcagaagacctgcgc
ctgttgtacgtggcgctgacccgctcggtgtaccactgcagcatcggtatcgcgccgctg
ttccagggcacgcgcaagaaacagggcgataccgatctgcaccgcagcgcattgggttat
ctggtgcagggcgggcaggccggcgacgccgcgtatctgcaggagcgcctgcagcaattg
gcgggcggcggcatcgcgctgtcgctggtggaaccgccggacgaggcgccctggcagccc
caggcatcgctggccgctacgctggcggcgaaaagctttacccgacggatccaggatttt
tggcgggtgaccagctataccggtttgcaacagcacggttcgagcctgatgcaggatctg
ctgccgcgtctggatgtcgacgccgcgggcgagcggggtgaggagagtgagccagcgctc
acaccgcataccttcccgcgcggcgcaacgcccggcaccttcctgcacagcctgtttgaa
acgctggacttcacccagccgctggacgaacagtggctgctggcacagctgcaacagcaa
ggatttgccgagcactggcagccaattttgctggcgtggatgcaggtgttgctcaacacg
ccgctcgccgccagcggcgtgacgttgtcggcgctgacgccgcagcacaagcaggccgag
ctgcagttctatttgccgattaaccggttgttgcaggcgaaggcgctcgatgccctggtg
aagcgttacgatccgctttccgcccgctgcccggcgctagattttcatcaggtgcagggc
atgctgaaaggctttatcgacctggtgttctgctggcagggcaaatactacctgctggac
tacaagtccaactggctgggggaagacagtagcgcctatacccggccggcgatggagcag
gcgatggcggagcatcgttacgatctgcaataccagctgtatacgctggcgctgcatcgt
tatctgcgtcatcggttgacggattacgattatcggcgccattttggcggggtgatttat
ctgtttctgcgcggcgtggatgcggcgcacccgggcaacggcattttcacttgtctcccc
gagcttgagctggtggaggggatggatcgcttgttcagcggcgaagctgcggcgacggag
gaaggatcatga
DBGET
integrated database retrieval system
