Serratia marcescens SM39: SM39_4308
Help
Entry
SM39_4308 CDS
T03592
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM39_4308 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smar03019
]
SM39_4308 (recQ)
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_4308 (recQ)
Enzymes [BR:
smar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SM39_4308 (recQ)
Messenger RNA biogenesis [BR:
smar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SM39_4308 (recQ)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SM39_4308 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BAO36239
LinkDB
All DBs
Position
complement(4481298..4483130)
Genome browser
AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQTIINAAIGGQDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLLAYGVSAACYNSTQTREEQLDVMAGCRNGTIKMLY
IAPERLMMESFLNLLDHCPPAMLAVDEAHCISQWGHDFRPEYRALGQLKQRFPSMPVIAL
TATADESTRGDIVRLLSLQDPLVQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTAARLQSRGLSIGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKPAGQQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKHENCGNCDICLDPPKRYDGLEDARKAL
SCVYRVGQRFGLGYIVEVLRGSNNQRIREYGHDKLPVYGIGRDQTTEHWTSVLRQLIHLG
FITQNIAMHSALQLTEAARPVLRGEVALQLAVPRIQSLKSRGSANQKSYGGNYDRKLFAK
LRKLRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAM
IRDHLDNDED
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgattaacagagagttgctggccgagcaggtattgcgcgatacc
ttcggctaccagcaattccgtccgggccaacaaacgattatcaacgccgcgatcggcggg
caggattgcctggtggtgatgccgaccggcggcggcaagtcgctgtgttaccaaatcccg
gcgctggtgatggacggcctgaccctggtggtttccccgctgatctcgctgatgaaggac
caggtcgaccaactgttggcctacggcgtttccgccgcctgctacaactcgacgcaaacc
cgcgaggagcagctggacgtcatggccggctgccgcaacggcaccattaagatgctgtac
atcgcgccggaacggctgatgatggaaagcttcctcaacctgctcgaccactgcccgccg
gcgatgctggcggtggatgaggcgcactgtatttcgcagtggggccatgacttccggccg
gaatatcgcgcgctgggtcagctgaaacagcgcttcccgtcgatgccggtgatcgcgctg
accgccaccgccgacgagtccacccgcggcgatatcgtgcgcctgctgtcgttgcaggat
ccgctggtgcaggtcagcagcttcgaccggccgaacatccgctacacgctggtggaaaaa
ttcaagccgctcgatcagttgtggcgcttcgtgcaggatcagcgcggcaagagcggcatt
atctattgcaacagccgcgccaaggtggaagacaccgccgcgcgtctgcagagccgcggg
ctgagcatcggcgcctaccacgccgggctggacaacgatcgccgtgcgcaggtgcaggaa
gcgttccagcgcgacgatctgcaggtggtggtggccaccgttgccttcggcatgggcatc
aacaaacccaacgtgcgcttcgtggtgcatttcgacattccgcgcaatatcgaatcctat
tatcaggagaccggccgcgccgggcgcgacggtctgccggccgaagccatcctgctgtac
gatccggccgacatggcctggctgcgccgctgtctggaggaaaaacccgccgggcagcag
ttggacatcgagcgccacaagctgaacgccatgggcgcgttcgccgaggcgcaaacctgc
cgccgtctggtgctgctcaactacttcggcgaaggcaagcacgagaactgcggcaactgc
gatatctgcctcgatccgcccaagcgctacgatgggctggaggatgcgcgcaaggcgctg
tcctgcgtgtaccgcgtcggccagcgcttcggcctggggtacatcgtggaagtgctgcgc
ggctccaacaaccagcgcattcgcgaatacggccacgataagctgccggtgtacggcatc
ggccgcgatcagaccaccgaacactggaccagcgtgctgcgccagctgatccacctgggc
tttatcacccagaacatcgccatgcactcggcgctgcaattgaccgaggcggcgcgtccg
gtgttgcgcggcgaggtggcgctgcagctggcggtgccgcgcatccagagcctgaagtcg
cgcggtagcgccaaccagaaatcctacggcggcaattacgatcgcaagctgttcgccaag
ctgcgaaaactgcgcaaatcgattgccgacgaagaaaacattccgccgtatgtggtgttc
aacgacgccacgctgctggaaatggccgaacagatgccgatcaaggccggcgatctgctg
agcgtcaacggcgtcggccagcgcaaactggagcgtttcggcgcgccctttatggcgatg
atccgcgaccatctcgacaatgatgaagactga
DBGET
integrated database retrieval system
