Serratia marcescens SM39: SM39_4343
Help
Entry
SM39_4343 CDS
T03592
Symbol
rhlB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM39_4343 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smar03019
]
SM39_4343 (rhlB)
Enzymes [BR:
smar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SM39_4343 (rhlB)
Messenger RNA biogenesis [BR:
smar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SM39_4343 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAO36272
LinkDB
All DBs
Position
4519076..4520362
Genome browser
AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYTKQNYVDLGAMQVVVLDEADRMYDLGFIKDIR
WLFRRMPAADQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGNLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIDHSIPVSKYNSDALLTDLPAPKRLSRPRGGNGPRRNSAPRRGGAP
RNNRKRSS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgactgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgagaaaaaagggtttcacaattgcacgcccatccaggcgttagcattg
ccgctcacgctctccgggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ctggcgtttttggcgtctacttttcactatttgctgactcacccggcgaaacaggatcgc
cagaccaatcagccgcgcgccttgatcatggcgcctacgcgtgaactggcggtgcaaatc
cactccgacgcagaagcgctctcccagagcaccggcctgaaactgggcctggcctacggc
ggcgacggctacgacaaacagctgaaagtgctggaaagcggcgtggacattctgattggc
accaccggccgtttaatcgattacaccaagcagaactatgtcgatctcggcgcgatgcag
gttgtcgtgctggatgaagccgatcgcatgtacgatctcggctttatcaaagacatccgt
tggctgttccgccgcatgcctgcggccgatcaacgcctgaacatgctgttctccgccacc
ctgtcctatcgcgtacgcgagctggccttcgagcagatgaacaacgccgaatatgttgaa
gtggaaccggaacagaaaaccggccaccgcattaaagaagagctgttctacccgtccaac
gaagaaaaaatgcgtctgctgcagacgctgatcgaagaagagtggccggatcgcgccatc
atcttcgccaacaccaagcaccgctgcgaagacatctggggccatctggccgccgacggt
caccgcgtgggcctgctgaccggtgacgtggcgcaaaaaaaacgcctgcgcatccttgac
gacttcactaaaggcaacctcgacatcctggtcgccaccgacgtcgccgcgcgcggtctg
cacattcctgccgtcacccacgtcttcaactacgatctgcctgacgattgcgaagactac
gtgcaccgcatcggccgtaccggccgcgcaggcgccagcggccactccatcagcctggcg
tgtgaagagtacgcgctcaacctgccggcgatcgagacctatatcgaccacagcattccg
gtaagcaagtacaatagcgatgcgctgctgaccgatctgccggcgccgaaacgcctgtcg
cgcccgcgcggcggtaacggcccacgtcgcaactccgcgcctcgtcgcggcggcgcgccg
cgcaacaaccgtaaacgctcgagctga
DBGET
integrated database retrieval system
