Sinorhizobium medicae: Smed_1154
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Entry
Smed_1154 CDS
T00555
Name
(GenBank) exodeoxyribonuclease III Xth
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Smed_1154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_1154
Enzymes [BR:
smd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Smed_1154
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Smed_1154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ABR60005
UniProt:
A6U8M5
LinkDB
All DBs
Position
complement(1228596..1229387)
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AA seq
263 aa
AA seq
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MKIATWNINGVKARLDGLVGWLKESNPDIACLQEIKSIDDAFPRGEIESLGYHVETHGQK
GFNGVALLSKLRPDEVNRGLPGDASDEQSRFIEGVFSVNGGALRVCCLYLPNGNPVETEK
YPYKLAWMRRLAAFAEQRLMLEEPLILAGDYNVIPEPHDCWDVKVWRNDALYLPETRAAF
RRLRNLGFTDAVRATSDEAPLYSFWDYQAGCWPKNLGIRIDHLMLSPEAADKLVSTSIEK
HVRSWEKPSDHVPVTAEFAFEIA
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgccacatggaacatcaacggcgtcaaggcgcgtctcgacggcctcgtgggc
tggctaaaggaatcaaatcccgacatcgcctgtctgcaggagatcaagtccattgacgac
gcatttccgagaggtgagatcgagtcgctcggctatcatgtcgaaacgcacggtcagaag
ggattcaatggcgttgcgctgctttccaagctgcgaccggacgaggtcaatcgcggattg
ccgggggacgcttccgacgaacagtcacgctttatcgaaggcgtgttctcggtcaacggc
ggtgcgctacgcgtctgctgcctctatttgccgaacggaaatccggtagagacggaaaaa
tacccctacaagcttgcatggatgcggcgcctcgccgcctttgcggaacaaaggctcatg
ctcgaggaaccactcatcctcgccggtgactacaatgtcattccggagcctcatgactgc
tgggacgtcaaggtctggcgtaacgacgccctgtacctgcccgagacccgcgccgccttc
cgccgtctgcgcaatcttggtttcaccgacgccgtgcgcgcgacctccgacgaggcgccg
ctctattcgttctgggattatcaggccggctgctggccgaagaatctcggcatccgcatc
gaccacctgatgctgtcgccggaggcggccgacaagctcgtgtcgacctctatcgagaag
cacgtccgatcctgggaaaagccgtccgaccacgtacctgtgacggctgaattcgcattc
gagatcgcttag
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