KEGG   Sinorhizobium medicae: Smed_3072
Entry
Smed_3072         CDS       T00555                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
smd  Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:smd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:smd03016]
    Smed_3072
Enzymes [BR:smd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Smed_3072
Transfer RNA biogenesis [BR:smd03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Smed_3072
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: ABR61898
UniProt: A6UE18
LinkDB
Position
complement(3220102..3220689)
AA seq 195 aa
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDR
IERPEFQLQLSGTGAFGSKKPHSVWAGVSAVPEMFALQAEIERICQRIGLPSDPRKFTPH
VTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSRDSVGGGPYLTEEVFPLHEER
SSLSSTDKHPASSAW
NT seq 588 nt   +upstreamnt  +downstreamnt
atgccgagactattcaccgccctcgaaattccgcgcaatgcagcaatgagtctttccttg
ctgcgcggaggtcttcccggagctcgctggatcgatgtggagaattatcacatcacgctc
cgcttcatcggcgacgtagactggcgtaccgccgatgaaatcatcgacagacttgaccgc
atcgaacggcccgagtttcagctgcagctgtcgggcaccggcgccttcggctccaagaag
ccgcattccgtctgggccggcgtcagtgccgttcccgagatgttcgccctgcaggcggaa
atcgaacgcatctgccagcgcatagggctgccctcggatccacgcaagttcaccccgcat
gtgacgctggcgcgcctgcgctcatcgcgcgtcgaggacgtggtcgaatacctctccggg
cgtggcaatttcgtcactgctccattcaccgtttcgcgcttcgtgcttctatcgtcacgc
gattcggtcggcggtggtccgtatctcacggaagaggtctttccgcttcacgaagagcgc
tcgagcctctcgagtaccgacaaacatccggcttccagcgcctggtag

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