Sinorhizobium medicae: Smed_3072
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Entry
Smed_3072 CDS
T00555
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smd03016
]
Smed_3072
Enzymes [BR:
smd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Smed_3072
Transfer RNA biogenesis [BR:
smd03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Smed_3072
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
ABR61898
UniProt:
A6UE18
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All DBs
Position
complement(3220102..3220689)
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AA seq
195 aa
AA seq
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MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDR
IERPEFQLQLSGTGAFGSKKPHSVWAGVSAVPEMFALQAEIERICQRIGLPSDPRKFTPH
VTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSRDSVGGGPYLTEEVFPLHEER
SSLSSTDKHPASSAW
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgccgagactattcaccgccctcgaaattccgcgcaatgcagcaatgagtctttccttg
ctgcgcggaggtcttcccggagctcgctggatcgatgtggagaattatcacatcacgctc
cgcttcatcggcgacgtagactggcgtaccgccgatgaaatcatcgacagacttgaccgc
atcgaacggcccgagtttcagctgcagctgtcgggcaccggcgccttcggctccaagaag
ccgcattccgtctgggccggcgtcagtgccgttcccgagatgttcgccctgcaggcggaa
atcgaacgcatctgccagcgcatagggctgccctcggatccacgcaagttcaccccgcat
gtgacgctggcgcgcctgcgctcatcgcgcgtcgaggacgtggtcgaatacctctccggg
cgtggcaatttcgtcactgctccattcaccgtttcgcgcttcgtgcttctatcgtcacgc
gattcggtcggcggtggtccgtatctcacggaagaggtctttccgcttcacgaagagcgc
tcgagcctctcgagtaccgacaaacatccggcttccagcgcctggtag
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