Sinorhizobium medicae: Smed_4484
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Entry
Smed_4484 CDS
T00555
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smed_4484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smd03019
]
Smed_4484
Messenger RNA biogenesis [BR:
smd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Smed_4484
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABR63284
UniProt:
A6UI04
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All DBs
Position
pSMED01:complement(968351..969847)
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AA seq
498 aa
AA seq
DB search
MSTFKELGLSQEILATLTANGFEKPTPIQTQAIPLVLQGRDLIGLAQTGTGKTAAFGLPM
IEKLQADGKRPDPRNIRALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTILKQT
LTANPDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVADAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIEIAVASGEVPADQARPSKGRGGRGNAQSRGNGAGQRQGGPRRDRPQRQSAAGG
FAGDELLRDDRSQQHERRDHRAPGQDGRPEGNRNHEAKKHHGRPGPKRDGRRGNEGQPSN
RNEGARGMRRAENRAPRG
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgtccacatttaaagagctcggcctctcgcaggagatcctggcgacactgaccgccaac
ggtttcgagaagccgacgcccatccagacccaggccattccgcttgtcctccaaggccgc
gatctcatcggcctcgcccagacgggcacgggcaaaacggccgcctttggcctgccgatg
atcgaaaagcttcaggccgacggcaaacgccccgatccgcgcaacatccgtgccctcatc
cttgcgccgacccgagagctcgtcaaccagatcgccaccaatcttaaactcttcgtgaag
aagacaccgattaaagtcggagtcgtggtaggcggcgtgtcgatcaacaagcagaccgaa
cagctggcgcgcggcgtcgatattctcgtcgcaacgcccggccgtctgctggatctcatc
tcccgcaaggctgtgaccctcacccagggacgctacctcgtcctggacgaggccgaccag
atgctcgacctcggctttattcacgacctgcgcaagatcgcgaagctcgttccgaagaat
cgtcagacgctgctcttctccgcgaccatgccgaagctgatcgccgagcttgccggcgaa
tatctcaccgatccggtcaaggtcgaggtcacgcggcccggcaaggcggccgacaaggtc
gagcaatatgtccacttcgttccgggcaaggacctgaagacgacaatcctcaaacagacg
ctgaccgcaaatccggacggattgtcgctggtcttcagccgcaccaagcatggcgccgaa
aagctgatgaagcatctggaccaggtcggtttcaaggccgcctcgatccacggcaacaag
agccagggccagcgagagcgcgctctgaaagccttccgcgatggtgaaatccgtgtactc
gtggcgaccgatgtcgccgcacgcggcattgacattcccggcgtgacgcatgtctacaac
tacgacctgccggaggtggccgacgcttatgtccaccgtatcggccgcacggcccgaaac
ggccgcgacggtattgcgatcgccttttgcgccccggacgaaatccggctgctgcgcgat
attgaaaagctgatgggcatcgagattgccgtcgccagcggagaagttccggccgaccag
gcccgcccgtccaagggacgcggcggtcgcggcaacgcccagtcccgcggcaatggcgca
ggacagcgccagggcggacctcgccgggatcggccacaacgccagtcggcagccggcggc
ttcgccggcgacgaactgttgcgcgacgaccgttcgcaacagcacgagcgccgcgatcat
cgtgctccgggccaggacggtcgtccggaaggcaaccgcaaccacgaagccaagaagcac
catggccgtccgggcccgaagcgtgacggccggcgcggcaatgaaggccagcccagcaac
cgcaatgaaggcgcccggggcatgcgccgcgcggaaaatcgcgcgccgcgagggtaa
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