KEGG   Sinorhizobium meliloti GR4: C770_GR4pC0191Help
Entry
C770_GR4pC0191    CDS       T02405                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smeg  Sinorhizobium meliloti GR4
Pathway
smeg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smeg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C770_GR4pC0191
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smeg03400]
    C770_GR4pC0191
Enzymes [BR:smeg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C770_GR4pC0191
DNA repair and recombination proteins [BR:smeg03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C770_GR4pC0191
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AGA08930
LinkDB All DBs
Position
pRmeGR4c:196713..199349
Genome map
AA seq 878 aa AA seqDB search
MADNLSKYRAKRDFKKTREPSGEAQVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRNDYSVDENGAAILEENA
TSIASGRSMEQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDVATSTA
ADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQMRIADGKVTLKTRKGLDWTAKYPE
IADAASELPDCIIDGEICALDDNGAPDFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLVERKKRLEDFLAAGSDDPRIRYVDHFESGGDAVLRSACKLSLEGIVSKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYATTNGKFRSLLVGVHRGDHFVYVGRVGTGFGAAKVERFF
PKLKALEASKSPFTGIGAPKKEKEVTWLKPELVAEIEFAGWTADGLVRQAAFKGLREDKP
AKEVQAEKPSPPARTDTPEPGPSAKTRPVRRKGAKAEVMGVLISSPDKPLWPDAGDGEPV
TKEDLARYHEAVGTWLIDHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLKLVKVFGD
KKPYLQIDRIEGLAAIAQIGGIELHPWNCEPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
EMRDRLDELGLVSFCKTTGGKGLHVVTPFAVNKRKPLSWAEAKGFAHDVCEQMARDNPDL
YLIKMSKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLNWTQVKSDLYPKRFT
VRTVPALLAKTTAWQDYCDGERPLEQAIKRLGKSRRAA
NT seq 2637 nt NT seq  +upstreamnt  +downstreamnt
atggctgacaatctttcgaaataccgtgccaagcgcgatttcaagaaaaccagagaacca
agcggcgaggctcaggtcaagccgtcgaaccgccggcggttcgtgatccagaagcacgac
gccacccggcttcactatgatctgcggcttgaactggacggggtgttcaagagctgggcg
gtgaccaagggcccatcgctcgatcctagtgacaagcgactggcagtcgaagtcgaagat
cacccgctcgactatggcgacttcgaaggcacgattccaaagggccagtatggcggcggc
acggtcatgctatgggaccgcggctattgggagccagaaggtaggaagtcacctgaagag
gccctgaagaagggcgacttcaagttcacgcttcatggcaagcggctgcatggcagcttc
gtcctggtgcggatgcgcaacgatcgcgatggcggcaagcggaccaactggctgctcatc
aaacatcgtaacgattactccgttgacgagaacggcgcggcaatcctggaggagaacgcg
acttccatcgcctccggccgcagcatggagcagatcgccgagggcacgggccgcaagcca
cgaccgttcatgatggcgaacgcggatgtcgaggcagatgccgtctgggacagcaagcat
ggcttggctgcggaagagcgcaagaaggggtctcgcagggatgtcgcgacctccacggca
gccgacctgccggattttatcgagccgcagctctgcgagacgcttgcgcggccgccggcc
agcgacgactggctgcatgagatcaagttcgacggttatcggatccagatgcggattgcc
gacggtaaggtgacgctgaagacgcgcaagggtctcgactggaccgcgaaatatccagag
atcgccgatgctgcgtccgaattgcccgattgcatcattgatggcgaaatctgcgccctc
gacgacaatggcgcgcccgatttcgcagcactccaggccgcgctctcggaaggcaagacc
ggcaaccttgtctacttcgccttcgacctgctgtttgatggcggcgaggacttgcggtcg
atgcgattggtcgagcggaagaagcggctcgaagacttcctcgcggccgggagcgacgat
ccgcgtatccgctacgtcgatcacttcgaatccggcggtgacgcggtgctccgctccgcc
tgcaagctgtcgctcgaaggtatcgtctccaagcagatggatgcgccctaccaatcgggc
cgcaccgacacctgggcgaagtcgaaatgccgggctggtcatgaggtggtgatcggtggc
tatgctacgaccaacggcaagtttcgatctctcctggtcggcgttcaccgcggcgatcac
ttcgtctatgtcggccgggtcggcacgggcttcggcgccgcgaaggtcgagcggttcttt
cccaagctgaaggcgttggaagcatcgaagtcacccttcaccggcatcggtgcgccgaaa
aaggagaaggaagtcacctggctgaaaccggagctcgttgccgagatcgagttcgccggc
tggacggccgacggcctagttcgtcaggcagccttcaaaggcctgcgcgaggacaagccg
gcgaaagaggtccaggccgagaagccgtcaccgcccgccaggaccgacacgcccgagcct
gggccgtccgccaagaccagaccggtgcggcgcaagggcgccaaggccgaggtcatgggc
gtcctcatctccagtcccgacaagccactctggccggacgccggcgatggcgaacccgtg
accaaggaagatctcgcccgctaccatgaagccgtcggaacctggctcatcgatcacatc
aagggccggccctgctcgatcattcgagcgcccgacggcattggcggcgagcagttcttc
cagcgccatgcgatgccaggcacctccaatctgctcaaactggtgaaagtcttcggggac
aagaagccctaccttcagatcgatcggatcgaagggctcgcggcgatcgcccagatcggc
ggaatcgaactacatccgtggaactgcgaacccggcaagccggaagtgcccggccgtctg
gtgttcgatctcgatcctggtcccgacgtgccgtttgcgacagtggtcgcggccgcgcgg
gaaatgcgtgaccggctcgacgagctcggcctcgtcagtttctgcaagacgaccggcggg
aagggattgcatgtcgtcacgccattcgctgtgaataagcgcaagcctttgtcatgggcc
gaggctaagggattcgcgcatgacgtttgcgagcaaatggcgcgcgataatcccgatctt
tatctcatcaagatgagcaagagcctcaggggcggaaggatcttcctcgattatctccgc
aacgaccgcatggcgaccgccgtggcgccactgtcgccgcgcgcacggcccggcgccaca
gtctcgatgccgctcaactggacgcaggtgaagtccgatctctacccgaagcggtttacc
gtccgcaccgtgccggcgctgcttgcgaaaaccactgcctggcaagactattgtgatggc
gagcggccgctcgaacaggcgatcaagcgcctcggaaaatcaagacgggctgcgtga

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