Sphingosinicella microcystinivorans: SmB9_19330
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Entry
SmB9_19330 CDS
T05811
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
smic
Sphingosinicella microcystinivorans
Brite
KEGG Orthology (KO) [BR:
smic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smic03032
]
SmB9_19330 (topA)
03400 DNA repair and recombination proteins [BR:
smic03400
]
SmB9_19330 (topA)
Enzymes [BR:
smic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SmB9_19330 (topA)
DNA replication proteins [BR:
smic03032
]
Prokaryotic type
DNA Topoisomerases
SmB9_19330 (topA)
DNA repair and recombination proteins [BR:
smic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SmB9_19330 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
MarR_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BBE34275
LinkDB
All DBs
Position
complement(2020908..2023490)
Genome browser
AA seq
860 aa
AA seq
DB search
MQLVIVESPAKAKTINKYLGSDYKVLASYGHVRDLPPKDGSVDPDHDFSMKWEVSADRSR
QLKEIADSAKTADTLILATDPDREGEAISWHLYEHLKAKKALPPKVQRVTFNQITKTAVT
QAMASPRELDTPLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIEAFKSREYWTVDGQFQTATGQTFTARLTHWQGNKLDKFSLNNAALANEARADVAAGD
YVVASVEKKPVSRNPAPPFTTSTLQQEAARKLGLSATQTMRTAQTLYESGLITYMRTDGV
DMAPEAIAAARDVIAEDFTGRHLPEKPRFYTTKAKNAQEAHEAIRPVDMRRRPAKAGLSG
DEARLYELVWKRTLASQMAAANLERTTVDLKDKNGRADLRATGQVTIFPGFLALYQETAD
DPDDEEGDDGKRLPKIEKGDTPAIQGAHADQHFTEPPPRYSEASLVKKMEELGIGRPSTY
ASILQVLKDRAYVRIEQKRFHPEEKGRLVTAFLERFFERYVSYDFTAGLEEQLDEISAGS
IDWTAVLHAFWKDFQPKTAEILELKPSEVTTALDEFLEPLLFPDTGDGKDPRVCPVCGNG
RLSLKTGKFGAFVGCSNYPECRFTRPFASENGNGNGTGEGGDQPRLLGEDAGEPITIRSG
RFGLFIQRGEGEKPPRASIPRDVDAATIELDMAVKLLALPREVGTHPETGQPITASIGRY
GPYLMHEGKYARLTSTAEVFEIGMNAAVVKLAEQKKGFERKAPAALKELGAHPTSGAAIK
VMDGRYGPYVTDGTTNATLPKGTDPQALTLEAAATLIDEKAAKGPAKGKGKRKAPAKSGA
KTAAKKAPAKKAPAKKKAAK
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgcaacttgtgatcgtcgaatccccggcgaaggcgaagacgatcaacaaatatctgggt
tcggactacaaggtcctggcctcgtacggccatgtccgcgacctgccgcccaaggacgga
tcggtcgaccccgaccatgacttcagcatgaagtgggaggtttccgccgaccgatcgcgc
cagctgaaagagatagccgacagcgcgaagaccgccgatacgctgatcctcgcgaccgac
cctgatcgcgaaggcgaagcgatcagctggcatctttatgagcatctgaaggcgaagaag
gcgctgccgccgaaggttcagcgcgtgaccttcaaccagatcaccaaaaccgccgtgacg
caggcgatggcgagcccgcgcgagctcgacacgccgctgatcgacgcctaccgggcgcgc
cgcgcgctcgactatctcgtcggcttcacgctctcccccgtgctgtggcgcaagctgccg
ggcgccaaatcggcggggcgcgtgcaatcggtggcgctgcggctcgtcgtggagcgcgag
cgggagatcgaggcgttcaagtcgcgcgaatactggacagtcgacggccagttccagacc
gcgaccggacagaccttcacggcacggctgacacactggcagggcaacaagctcgacaag
ttctcgctgaacaacgcggcgctggcgaacgaggcgcgcgcagacgtggccgcgggcgat
tatgtcgtcgcgtcggtcgagaagaagccggtgtcgcggaaccccgccccgcccttcacc
acatcgacattgcagcaggaagccgcgcgcaagctgggactttccgcgacgcagacgatg
cgcaccgcgcagacgctgtatgaaagcgggctcatcacctacatgcggacggacggcgtc
gacatggcgcccgaagccatcgccgccgcgcgcgacgtgatcgccgaggacttcaccgga
cgccacctgcccgaaaagccgcgtttctacacgaccaaggcgaagaacgcgcaggaagcg
cacgaggcgatccgccccgtggacatgcgccgtcgccctgcgaaggccgggctttcgggc
gacgaggcccgtctttacgagctggtctggaagcgcacgctggcaagccagatggccgcc
gcgaaccttgaacgcacgaccgtggacctgaaggacaagaacggccgcgccgatcttcgc
gcgaccggacaggtgacgatcttcccgggcttcctggcgctctatcaggaaaccgccgac
gatcccgacgacgaagagggcgacgacggcaagcgcctgcccaagatcgaaaagggcgac
acgcccgcgatccagggcgcgcatgccgaccagcacttcaccgagccgcccccgcgctat
tcggaagcgagcctcgtgaaaaagatggaggagctcggcatcgggcgtccctccacctac
gcctcgatcctgcaggtgctgaaggaccgcgcctatgtgcgcatcgagcagaagcgcttc
catcccgaggaaaagggccggctcgtcaccgcattcctcgaacgcttcttcgaacgctat
gtgagttacgacttcacggcggggcttgaggagcagctcgacgagatttccgccgggagc
atcgactggacggctgtgctgcacgccttctggaaggacttccagccgaagaccgccgag
atcctggagctgaaaccctccgaggtgacgacggcgctcgacgaattcctggagccgctg
ctgttcccggataccggcgacggcaaggacccgcgtgtctgcccggtgtgcggaaacggg
cggctgagcctgaagaccggcaagttcggcgcgttcgtcggctgctccaactaccccgag
tgccgcttcacgcggccgttcgcgagcgaaaacggcaacggcaacggcacgggcgaaggc
ggcgaccagccgcgtctgctgggcgaagacgcgggcgagccgatcaccatccgatcgggc
cgcttcggcctgttcatccagcgcggcgaaggcgagaagccgccgcgcgcctcgatcccg
cgcgacgtggacgcggcgacgatcgaactcgacatggccgtgaagctgctcgctttgccg
cgcgaggtgggaacgcacccggagacagggcagccgatcaccgcctcgatcggtcgctat
ggcccctatctgatgcacgagggcaaatatgcgcgcctgacttcgaccgctgaggtgttc
gaaatcggcatgaatgccgccgtcgtgaaactggccgagcagaagaagggctttgagcgc
aaagcccccgccgcactgaaggaactcggagcgcacccgacatcgggcgccgcgatcaag
gtgatggacggccgctacggcccctacgtcaccgacggcacaaccaacgcgacgctgccc
aagggcaccgacccgcaggcgctgacactggaagccgcagccacgctcatcgacgagaag
gcggccaagggcccggcgaagggcaagggcaaacggaaagcgcccgcgaagagcggcgcg
aaaacggccgcgaagaaggccccggcgaaaaaggctcccgcaaagaaaaaggcggcgaag
taa
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