KEGG   Sphingosinicella microcystinivorans: SmB9_21330Help
Entry
SmB9_21330        CDS       T05811                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smic  Sphingosinicella microcystinivorans
Pathway
smic03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SmB9_21330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smic03400]
    SmB9_21330
Enzymes [BR:smic01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SmB9_21330
DNA repair and recombination proteins [BR:smic03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SmB9_21330
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Motif
Other DBs
NCBI-ProteinID: BBE34475
LinkDB All DBs
Position
complement(2245226..2247715)
Genome map
AA seq 829 aa AA seqDB search
MARRADPLKDYNARRDFKKTPEPAGTPGRAEGNSFVVQKHAATRLHYDFRLELDGVLKSW
AVTRGPSLNPDDKRLAVRTEDHPLSYGGFEGNIPKGEYGGGTVMLWDEGTWEPVAGKDPR
QTLKDGHLHFTLHGKRMKGEWLLVRMKPRAGEKRENWLLRKIDDTHAGGSDELVETVLTS
VETGRSMAQIAAGAPAVSLKGKRGKAFTRAMTEARSATVRAKPKSAKSGRLPAFRAPQLA
TLVDHVPTGTEWMHEIKFDGYRCLLAANGDKARIYTRTGLDWSDRFAPLVEAAAALDLPP
CLIDGEIVVMDRNGNPSFSALQKALTEGSDGFVLFGFDLLELDGEDLAQLPNIARKQRLS
GLLSPDGPIRYADHVVGAGEKLYEAMCGAGQEGIICKRVDARYVGKRTKNWLKVKCTRRQ
EFVIVGWTASSAKARPFASLLLAQNRANGLAYAGKAGTGFDADTFAMLEGKLRPLARKTA
PVAVPRAEARGANWVTPKLVAEIAFAEFTSDDRLRHASFIGLREDKMPGDIAPETPAPVS
DGDDGVTITHPDRVIFPEAKITKGELADYYRQVGAVMLPWLAHRPASLVRCPQGRARQCF
FQKHDSGSFGPAVHHIPIVEKNGKPDDYLYVENTQGILACVQMGTIEFHGWGARVEDVER
PDRMVFDLDPDEAIGFDIVKTAAKDLRKHLDDIGLISFPMLTGGKGVHVVVPLTPGAEWD
AVKDFAERFARAIAELEPDRFTATMSKAKRKGRIFIDWLRNQRGSTAIMPYSARARPGAP
VAAPISWKELDGIEKAGTFTVKDAKKLLKRAGSRDLAGWGVAAQNLPGI
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggcacgccgcgcggacccgctcaaagactacaacgcccggcgcgatttcaagaagaca
cctgaacctgccggaacgccggggcgcgcggagggcaacagtttcgttgtgcagaagcac
gccgcgacccgcctgcactacgatttccgcctcgagcttgatggcgttctcaagagctgg
gccgttacgcgcggccccagcctcaaccccgacgacaagcgccttgcggtccgcaccgaa
gaccacccgctcagctacggcggttttgagggcaatatcccgaaaggcgaatacggcggc
ggcacggtgatgctgtgggacgaaggcacgtgggagcctgtcgccgggaaggatccccgc
caaacgctgaaggacggtcatctccacttcaccctccacggcaagcgcatgaagggcgaa
tggctgctcgtgcgcatgaaaccgcgcgcgggggaaaagcgggagaactggctgcttcgg
aagatcgacgatacccacgcgggcgggtcggacgagcttgtcgaaacggtgctgaccagc
gtcgagacgggacgatcgatggcgcagattgcggcgggcgcgccagcggtctcgctgaaa
ggcaagcgcggcaaggccttcacccgcgccatgaccgaggcgcggagcgcgaccgtgcgc
gcgaaacccaagagcgcaaagtccggccgcctgccggcctttcgcgccccgcagcttgcg
acgctcgtcgatcatgtgcccacgggcacggaatggatgcacgagatcaagtttgatggc
taccgctgcctgctcgccgcaaacggcgacaaggcgcgcatctacacacgtacggggctt
gattggtcggatcggttcgcgccgctcgtcgaagctgcggcagcgctcgatctgccgccg
tgcctcatcgacggcgagatcgtggtgatggaccggaatggcaatccgagcttcagcgct
ttgcagaaggccctcacggagggcagcgacggcttcgtactgttcggcttcgacctgctc
gaactggatggcgaagacctcgcgcagcttcccaatatcgcgcgcaaacagcgcctctcg
gggctgctgtccccagacggccccattcgttacgccgatcatgtcgtgggcgcgggagaa
aagctctatgaggcgatgtgcggcgcggggcaggaaggcatcatctgcaagcgcgtcgat
gcgcgctacgtggggaaacgcacgaaaaactggctgaaggtgaaatgcacccgccgccag
gaattcgtgatcgtcggctggacggcgagcagcgcgaaggcgcggccgttcgcgtcgctg
ctgctcgcgcagaaccgtgcaaatggacttgcctatgcaggcaaagcgggcacaggattc
gatgccgatacgttcgccatgctcgaaggcaagctgcgccccctcgcacgcaagaccgcg
ccggtcgcggtcccgcgcgcggaagcacggggcgcgaactgggtgacgccgaaactcgtc
gccgaaattgcctttgccgaattcacgtccgatgatcgtctacgccatgccagtttcatc
gggttgcgggaggacaagatgccgggcgatatcgcacccgaaaccccggccccggtcagc
gatggagatgacggcgtaacgattacccatcccgatcgcgtgatcttccccgaagcgaag
atcaccaagggcgagctcgccgattattatcggcaggtcggcgccgtcatgctgccatgg
ctggcgcatcgcccggcaagccttgtccgctgtccgcagggccgtgcgcgtcagtgtttc
ttccagaagcacgacagcggcagcttcgggccggccgtgcatcacattcccatcgtcgaa
aagaacggcaagccggacgattatctctatgtcgagaatacgcagggcattctcgcctgc
gtccagatgggcacgatcgagttccacggctggggtgcccgcgtcgaggatgtcgagcgg
cctgaccggatggtcttcgatctcgatcccgacgaggcgatcggcttcgacatcgtgaaa
accgccgcgaaggatctgcgcaagcatctggacgacatcggtctcatcagcttcccgatg
ctcaccggcggcaaaggtgtccatgtcgtcgtccctctcacacccggcgcggagtgggat
gccgtcaaggatttcgccgaacgcttcgcgcgcgccatcgccgagttggagcccgatcgg
ttcacggccacgatgtcgaaggcgaaacgcaagggacgcatcttcatcgattggctgcgc
aaccagcgcggctccaccgcgatcatgccttatagcgcgcgcgcaaggcccggagcgccc
gtggctgcgcccatctcatggaaagagctggacggcatcgaaaaggccggcaccttcacc
gtgaaggacgcgaaaaaactcctgaaacgcgccggcagccgcgatctcgccggatggggc
gttgcggcccagaatctaccgggcatctag

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