Schistosoma mansoni: Smp_197370
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Entry
Smp_197370 CDS
T01095
Name
(RefSeq) hypothetical protein
KO
K19720
collagen type III alpha
Organism
smm
Schistosoma mansoni
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smm00536
]
Smp_197370
Glycosaminoglycan binding proteins [BR:
smm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
Smp_197370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
29830182
NCBI-ProteinID:
XP_018651259
UniProt:
G4VFE1
LinkDB
All DBs
Position
3:17754239..17775795
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AA seq
1308 aa
AA seq
DB search
MYHIKFYPIRTVFFLICLLHLIQAERVRRLKRQAEDVPSSGVKGPAPFGVTTYRVGAMGV
QGERGPPGPPGPDGPPGASGSPGPPGKTGGPGIPGPIGLPGPPGADGKPGRDGEAGNPGA
SGEVGPPGPSGPTGPPGLKGPVGLKGKKGERGDPGRDGVEGIRGDIGAPGLMGRTGARGG
VGPAGPSGTPGQVGPAGADGLPGAQGPPGPQGLPGEPGAIGPTGDQGEVGEVGIRGGVGE
PGKPGLDGKPGRPGEQGIQGPPGKDGIQGQKGDIGFRGAPGPEGMPGPRGAPGTSGSPGE
QGTKGSIGVSGPSGNRGPQGNAGPPGVIGPRGLPGPPGEVGKPGIPGSQGPPGAKGSAGV
AGSPGAPGRPGIDGRPGVPGPAGKSGPMGKTGPRGEPGQAGQDGKPGRIGPPGPPGENGR
DGIPGASGPPGPPGQPGKAGSSGIPGTTGASGPPGLQGDIGQQGPQGERGLPGSVGLPGP
KGEKGEKGPLGEAGAVGDAGPPGPQGKQGPIGEKGFQGLIGNVGSPGLRGPRGDPGPSGD
PGKDGTPGVDAPDGEVGATGPEGPQGPVGPAGQPGPRGLPGTKGEPGSIGPIGIPGRMGV
MGIPGAPGPSGPNGPPGFKGDRGISGAHGIPGKDGQPGSPGPIGARGPPGAIHVGGRSLG
IMGPPGPVGDNGVQGDVGVPGMPGQSGPVGLQGPSGAHGKRGPSGAPGPPGSPGANGRAG
TRGRAGSAGQLGGQGPPGVQGPAGIPGVRGPQGPRGLPGRQGPQGIPGKAGLSGPQGETG
LPGKPGKQGPTGPPGPAGKDGDPGEPGPPGTVGEPGDVGSPGAPGRDGPIGMIGMRGSSG
GPGPRGPPGPPGLSGPQGAAGPTGPQGPQGPRGSKGAKGPPGSEGPEGPPGEDGEQGPEG
LAGPPGEPGLDGPRGQRGIPGPLGPVGEVGQPGQDGRPGPQGERGVSGKPGLPGPPGVKG
AAGETGPDGQDGSSGLPGSPGGRGHPGWSGPPGPPGPPGPDGVRGDPGEIGYPGNPGPPG
DSGPIGETGTKGPKGQRGETGPPGPPGPSGRDGSSGPPGPMGPPGPPGPPGMPSVQLPTI
SRNTKAGNIYADDPLAGRIMGTYEPSRPRGTRSAPALTCKQLGEYNKNLPDDYYWIDPNG
NEINDVVQAYCKFKTSETCIRLKQKTLNSNYPNRENSTEEENNLGSQFYELIYELEGNQL
EYLKYHSLIGTQQIYEDCSIKSDHRLLSSSSSSNLFIKLFTNNGNELSYDHPYLGYEIIQ
NNCHFPAGLKKSAFLIKGSTARFPIRGIELLNPKISENLVQIGEVCFQ
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgtatcacattaaattttatccaattagaacagtattctttttaatatgtttattacac
ttaatacaagctgaacgagttcgaagattaaaacgtcaagctgaagatgtaccaagttct
ggagttaaaggtccggcaccatttggtgtaacaacctatagagttggtgcaatgggagtt
caaggagaacgtggaccaccaggaccaccgggaccagatggtccacctggtgcatcaggt
tcaccgggaccaccagggaaaacaggtggaccaggaattcctggacctattggattgcct
ggacctccaggtgcagatggaaaaccaggtcgagatggagaagctggaaatccaggtgca
tcaggtgaagttggcccaccaggtccatcaggaccaaccggtccacctggattaaaagga
cctgttggattgaagggtaaaaagggtgaaagaggtgatccagggagagatggtgttgag
ggcattcggggagatattggtgctcctggacttatgggacgtactggtgctcgtggagga
gttggacctgctggtccatcaggaacaccaggacaagttggtcctgctggagcagatggt
cttcctggagctcaaggtccaccaggcccacaaggtcttccaggagaaccgggtgctatt
ggtccaactggtgatcaaggagaagttggtgaagttggaatacgtggaggagttggtgag
cctggtaaacctggacttgatgggaaacctggacgacctggggaacagggaattcagggt
ccacctggaaaagatggaatacaaggacaaaaaggtgacataggatttcgaggagcgcca
ggaccagaaggtatgccaggtcctcgaggagcacccggcacatcaggttcgccgggtgaa
caaggaactaagggatccattggggtttctggaccttcagggaatcgtggacctcaggga
aacgctggcccaccaggtgttataggacctcgtggtttgccaggtcctcctggagaagtt
ggaaaacctggcattcctggttcccaagggcctcctggggcaaagggatcggctggagtg
gctggttctcccggtgcccctggtagaccaggtattgacggaagaccaggtgttccggga
cccgcagggaaaagtggcccaatgggaaaaactggaccaagaggagaaccaggtcaagca
ggacaagatggcaaaccagggaggattggtccccctggaccaccaggagagaatggacgg
gatggaattccaggggcttccggcccacctggcccacccggccaaccaggtaaagctggg
tcaagtggcattccaggaactacgggagcaagtggcccaccagggttacaaggagatatt
ggacaacagggtcctcaaggtgaacggggccttcctggatctgtaggcttacctggtcca
aaaggagaaaaaggtgaaaaaggtccgttaggtgaggctggtgctgttggtgatgcaggt
cctccgggacctcaaggaaaacaaggaccgattggtgaaaaaggatttcaaggtttgatt
ggaaatgttggctcccccggtttacgaggaccacgaggagatcctggaccgtctggtgac
cctggtaaagacggaacgccaggtgtagacgcaccagatggtgaagtcggtgcaacaggc
ccagaggggccacaaggtcctgtaggtccagcgggtcaaccaggacctcgaggtttgcct
ggtacaaaaggagaacctggcagtataggaccaattgggatacctggaagaatgggagta
atgggaataccgggagccccaggaccctctggtccaaatggtccgccaggttttaaagga
gatcgaggcatttcaggagcccatggaatcccgggaaaagatggccagcctggaagtcct
ggacctataggtgctagaggtccacctggtgcaattcatgtgggcgggaggtcgctagga
attatggggccacctggtccggttggggataatggcgtgcaaggagatgtcggagttcct
ggaatgcctggacaaagtggtccagtcggtcttcagggcccaagtggagcacatggcaaa
cgtggaccatcaggtgcacctggaccaccagggagcccaggtgcaaatggtcgtgcagga
actagaggtcgagccggtagcgcaggtcagttgggtgggcaaggtcctcctggtgttcaa
ggtccagcaggcattccaggagtcagaggacctcaaggccctcgtggtctgcctggtaga
caaggtcctcaaggaattccaggaaaagctgggttaagtggcccacaaggtgaaacaggt
ttacctggaaagccaggaaaacaaggtccgacgggaccacccggaccagccggcaaagat
ggtgatcccggagaaccgggtcctcctggaacagtaggtgaacctggagatgttggtagt
cctggagcacctggacgagatggtccaattggaatgattggtatgcgtggatcatcagga
ggacctggaccaagaggaccacctggtccaccaggcctaagtggcccacaaggagcagct
ggaccaactggaccacaaggtcctcaaggtccaaggggatcgaaaggagccaaggggcca
cctggatccgagggcccggaaggacctccaggagaagatggagagcaaggacctgaaggt
ttagctggacctcctggtgagcctggacttgatggaccacgaggacaaagaggtattcca
ggtcccttgggcccagttggagaagttggacaacctggccaagacggtcgtcctggacca
caaggagaacgtggtgtttccggtaagccaggacttccaggaccccctggagtgaaagga
gctgctggtgaaactggcccagacggacaggatggatcaagtggtctcccaggaagccca
ggtggtcgaggtcaccctggatggtctggaccacctggaccacctggtcctcctggtccc
gatggtgtacgtggagatcctggagaaattggttatcccgggaacccagggccaccaggt
gatagtggacctattggtgagaccggaaccaaaggtcctaaaggacaaagaggagaaaca
ggaccacctggtccaccaggtccttcaggaagagatggatcgtctggccctcctggaccg
atggggcctccaggacctcctggaccaccaggaatgccatctgtacaactaccaacaatc
agtcggaatacaaaagctggaaatatctacgcagacgatccattggcaggaagaattatg
ggaacgtatgagccttcaagaccaagaggaacaagatctgcacctgctttaacatgtaaa
caactaggtgaatataacaagaatctacctgatgattattactggattgatccaaatggt
aatgaaattaatgatgttgtacaagcttattgtaaatttaaaacaagtgaaacatgtatt
cgattaaaacaaaaaacgctaaattcaaattatccaaacagagaaaattcaactgaagaa
gaaaataatttaggaagtcagttttatgaattaatatatgaattagaagggaatcaatta
gaatatttaaaatatcatagtttaataggtacacaacaaatttatgaagattgttcaatc
aaatcagatcatagattattatcatcatcatcatcatcaaatttattcattaaattattt
acaaataatgggaatgaactatcttatgatcatccatatcttggatatgaaattattcaa
aataattgtcattttccagcgggattaaaaaagtccgctttcctgataaaaggttcaaca
gcccgatttccaatacgtggtattgaattactcaatccgaaaatctctgaaaatttagtt
cagataggagaagtgtgttttcaataa
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integrated database retrieval system