Selaginella moellendorffii: SELMODRAFT_232956
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Entry
SELMODRAFT_232956 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
smo
Selaginella moellendorffii
Pathway
smo03022
Basal transcription factors
smo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SELMODRAFT_232956
09124 Replication and repair
03420 Nucleotide excision repair
SELMODRAFT_232956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smo03021
]
SELMODRAFT_232956
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_232956
Transcription machinery [BR:
smo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SELMODRAFT_232956
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SELMODRAFT_232956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
BDHCT
Motif
Other DBs
NCBI-GeneID:
9655773
NCBI-ProteinID:
XP_002977382
JGI:
232956
UniProt:
D8S216
LinkDB
All DBs
Position
Unknown
AA seq
394 aa
AA seq
DB search
MEEEDKAPDMEAWERAYADDRSWESLIEDESGLLKAGDDVQQQRQHRRRLIQASGPRIQR
GIIRYLCLILDFSRAAGEIDFRPSRMAVVAKAVEDFVREYFDQNPLSQLGIIVMKNGIAS
VVTELSGSPEAHIRALKSNLESFGEASLQNGLELAHTYVQHIPSYGHREVVIVFSALSTC
DPGNILETVKKCKAARMKCSVVGLTAEIYICKHISQETGGSYAVAMNEGHLKEILLEHVP
PPAAMPDASSASLVRMGFPQRGSEGAVAICACHKELKIGGGYICPRCRARVCELPTECSL
CGLALVSSAHLARSYHHLFPIPTFDELLVDASLRGKSSFAGSCFGCRIQLSGSGSLRLRC
PRCKRDFCFDCDVYIHESLHNCPGCETLQEEAVT
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaggacaaggcaccagacatggaggcctgggagcgtgcgtacgcggacgat
cggtcgtgggagtcgctgatcgaggatgagtcggggctgctcaaggccggggacgatgtc
cagcagcaaaggcagcaccggcggaggctgattcaagcgtcggggcctcggatccagcgc
ggcatcatcagatatctctgcctcatcctcgatttctcccgggcagcgggagagatcgac
ttccggccctcgcgaatggcagtcgtcgcgaaagccgtcgaagacttcgtgcgggaatac
ttcgaccaaaatcctctcagccagcttgggatcatagtgatgaagaacggcatcgccagc
gtggtcacggaactaagtggcagtcctgaggcacacatccgcgccttgaagtccaacctt
gagtcctttggagaagcatcgctacaaaacgggctcgagctggcgcacacatacgtccag
cacatcccgtcttacggacacagggaggtggtgatcgttttctcggcgctgagcacttgc
gaccccggcaacatcctcgagactgtcaagaaatgcaaggccgccaggatgaaatgctcc
gtcgttggcctcacggcagagatctacatctgcaagcacataagtcaggaaaccggagga
tcatacgcagttgctatgaacgagggacatctcaaagaaatacttctggagcacgtccct
cctccagcggcaatgccagacgcctcgtctgcgagcctggtgcgcatgggattccctcag
cggggctccgaaggagcagtagcgatctgtgcgtgccacaaggagctgaagatcgggggt
ggctacatctgtcctcgctgccgggctcgggtgtgcgagctcccgaccgagtgtagcctg
tgtggcctggcgctggtttcctcggctcacttggcacgctcgtaccaccatctctttccc
attcccactttcgacgagctcctggtggacgcatcgctcagaggcaagtcgagctttgcg
gggtcttgctttggatgtagaatccagctctctgggagtggaagcttgagactgcggtgc
cctcgctgcaagagggatttttgcttcgactgcgatgtttacattcacgaatcgctacac
aattgcccggggtgcgagacgctgcaagaagaggccgtcacgtag
DBGET
integrated database retrieval system
