Selaginella moellendorffii: SELMODRAFT_451150
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Entry
SELMODRAFT_451150 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_451150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_451150
Enzymes [BR:
smo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SELMODRAFT_451150
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_451150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Acetyltransf_14
Motif
Other DBs
NCBI-GeneID:
9633502
NCBI-ProteinID:
XP_002970869
JGI:
451150
UniProt:
D8RI63
LinkDB
All DBs
Position
Unknown
AA seq
648 aa
AA seq
DB search
MALWRALPRRARVAGSGIRLFCSAVVRDSSHAITRQNFGAAFQRLKGLLREADFVAMDLE
MSGVHSAPWRKSMELDTLETRYHNVRDSAEKFSLLQCGLCLFRYDQASSKFLGHPFNFFL
FPRNELVLERDFLCQTSSLEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLAKKGEDEL
PEVSMRKTSDLIFSERVRLQVGLWRASKIMAKHKAKQEESSGRSSMPDDEAPLPSLVINV
SDKRQAKLVLKAVSSNFDDLVPMIEDNEKEATQVKVIYTGSSEHKIALQADLDKAKLDLM
ECDVMEAVGFRQVIDAISESKKPIVGHNCVLDLAHIYNKFIGPLPDNYSGFCNVIHELFP
AVIDTKYMLKVLRTSISTTSLYPVYSYYFGEDAKKNTKTKAHSTVNVEIADGFHKYSDAE
LKHEAGFDAYMTGAIFAQLWRTVVSNPTEFYALSKKILRGTHAISEFSNLLYMGWAGHFV
LDLKTGKEAKGSKALPERESYSARRPASDAAVIVWSQDPVGSSRQLQKLVKSCFEETQFS
SEVEVIPVSENAAFLAFKSLRSSEEFSQALESIKTKRKKLNTIAARLSSSGLEGARFGTF
EKLCKSELSTFNIGDAIQSINCFSDDELAASIENADAPDDLQVATVQG
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctggagagcgctacctcgccgcgctcgcgtcgctggtagcggcattaggttg
ttttgcagcgcagtcgtgcgcgattcctctcacgcgatcacgcgccagaatttcggggct
gcattccagcggctcaagggcctcctccgcgaggcggatttcgtggcgatggacctagag
atgtcgggggtgcacagcgcgccctggcgcaagagcatggagctcgacacgctggagacg
aggtatcacaacgtgagggattcggcagagaaattctcgttgctgcaatgtggcttgtgc
ttgtttcgatacgatcaggcttcttccaagttcttgggacacccgtttaattttttcttg
tttcctcgaaacgagctcgttcttgagcgcgacttcttatgccagacatcgtcactagag
tttctggcaaagcaccatttcgatttcaatgcttgcatatacaatggaatctcgtatcta
tcaaggaaagaagaagggaaacttcgggcattgcttgcaaaaaaaggggaggacgaactt
cctgaagtttccatgcgtaagacatccgacttgattttcagcgagagagttagactccaa
gttggtttatggcgtgcgtccaaaatcatggccaagcacaaagccaagcaggaggagtct
tctggtcgttcttccatgcctgacgatgaagctccacttccttctctagtcatcaacgtt
tctgacaagcgccaagcaaaacttgttttgaaggccgtgagtagtaacttcgacgatttg
gtgcctatgatcgaagataatgagaaagaggcgacacaggtgaaagtcatctacactggg
tcctcggagcacaaaattgcattacaggccgaccttgacaaggcaaagctggatctcatg
gagtgtgatgtgatggaggcagtgggttttcggcaagtaattgatgcaatctcggagtcg
aaaaaacccatcgtgggccataactgcgttctagatcttgctcacatctacaacaagttt
attggaccactcccggataattattccggtttctgcaacgtcattcacgaactctttccc
gccgtcatagatacgaagtacatgctcaaagttcttcggacgagcatcagtaccacgtct
ttgtaccccgtgtattcctactactttggtgaggatgcgaagaaaaacaccaaaacgaag
gcacattcaacagtgaacgtggaaattgctgatggctttcacaagtactctgacgcggag
ttaaaacatgaagcaggatttgatgcttatatgacgggtgcaatctttgcccagctgtgg
cggacagtggtctccaatcctaccgagttttatgcactctcgaaaaaaatccttcgtgga
acccacgctatctcggagttttccaaccttctctacatgggctgggctggtcatttcgtg
ctggacttgaagacggggaaagaagccaaaggctctaaagcattgccggaacgagaaagc
tactcagcccgacgtcctgccagtgatgccgcggttattgtctggtcacaggacccagtt
ggttcatcccgccagcttcagaaactggtaaagagctgcttcgaagagactcagttctca
tccgaggtggaagttattccggtgtccgagaatgcagcgttcctggcttttaagagcttg
cgttcctcggaggagttttcacaagctctcgaaagcatcaagacaaagaggaaaaagttg
aacactatcgccgcaaggctttcatcgagcggtctagagggtgcgcggtttggaaccttc
gaaaagctctgcaagtctgaactctcaacttttaacatcggggatgccatacagtcgata
aactgcttctccgacgacgaactcgccgccagcatagaaaatgcggatgctccggacgac
ttgcaagtagccaccgtacaaggatag
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