Staphylothermus marinus: Smar_1271
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Entry
Smar_1271 CDS
T00485
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
smr
Staphylothermus marinus
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smr03032
]
Smar_1271
03400 DNA repair and recombination proteins [BR:
smr03400
]
Smar_1271
Enzymes [BR:
smr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Smar_1271
DNA replication proteins [BR:
smr03032
]
Prokaryotic type
DNA Topoisomerases
Smar_1271
DNA repair and recombination proteins [BR:
smr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Smar_1271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Motif
Other DBs
NCBI-ProteinID:
ABN70362
UniProt:
A3DP02
LinkDB
All DBs
Position
1232814..1234985
Genome browser
AA seq
723 aa
AA seq
DB search
MGDKAKKSIIDYILSYSEKQKKKPVKTKEKTSSKKAIEKTEIQITHNIWDLIGKIVVIAE
KPKAANKIALALSRNPIRKSMYGIPYYLIKNRHSSIIVASAAGHLYGLHTDQYGYPVFKY
EWKPLYQIDPKAKHTEKFIMVLSKLCSNADYYVNACDYDIEGSVIGYLIIYFHGDLEKSL
RAKFSSLTIEELRESFRKLTSLDWEMIEAGLCRHELDWIWGINISRALMSSVKIASGKRV
ILSAGRVQTPTLRYVVEKDIERRLFIPLPQYSLSINIFKNNYEIHVEYKGKSVETKKNAK
EIIDEIKRTGYLIVKKYEEKIYTLNPPPAFNLGDLQEEAARIYGFSPYKTQSIAEKLYLD
ALISYPRTNSQKLPPTLNYKAIMNKLSRINNYKELVSNLLVETKGVLKPVQGSKDDPAHP
AIYPTGVKPKDLGKDEWKIYDLIVRRFLAAFASKARISHRIVYLEYPKDPSMVFQASGQK
ILDLGWLRYYPFSKPEERFLPKFQYGEKVKIVKASIRKTYTKPPEKINKIKILRWMENVG
IGTEATRARIIEILFSRYYLRSVGGRVEATDLGLGIIEVLMEYFPEITSVSLTRHFEEEM
EKIRLGVKRREEVVKDAKNTLIKLIVSFDKKKYQIGKTLSYRLGYITPINKCILCNREAY
KNNLCKYHYRALNTVIKTYDEWKRREGVDWNKYLSSIKKLKSTGKWIVEVIQNFEKIKYS
PSE
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
gtgggagataaggcgaagaaatcaataatcgattatatattatcatatagtgaaaaacaa
aagaaaaaacctgttaaaaccaaagaaaaaacttcatccaaaaaagctatagaaaaaaca
gagatacaaattactcataacatatgggatcttataggcaaaatagttgttatagctgaa
aaaccaaaagcagccaacaagatagcattggctctttcgagaaatcccatacgaaaatca
atgtatggtataccatattatttgattaaaaacagacatagctcgatcattgtagctagt
gctgctgggcatctttatggattacatacggatcaatatggttatcctgtgtttaaatat
gaatggaaaccattatatcaaatcgatcctaaagcaaaacacaccgagaaattcataatg
gttctttcaaagctatgcagtaatgctgattactatgttaatgcatgcgactatgatatt
gagggttctgtgatcggctatcttataatatattttcatggtgatttagaaaaaagtttg
agagcaaaattttctagtttaacaatcgaagaacttagagaatccttcaggaaacttact
agtctagattgggaaatgatcgaggcaggactttgtagacacgaattagactggatttgg
ggcataaatattagtagagcattaatgagctcagtaaaaatagcttctggtaaaagagta
attttaagtgcaggccgtgtccagactccaacacttagatatgttgtagaaaaagatatt
gagagaagattatttattccattgcctcagtactcgttatcaataaatatattcaagaac
aattatgagatacatgtagagtataaaggtaaatctgttgagacgaagaagaatgctaaa
gaaataatagatgaaataaaaagaactggttatcttatagttaaaaaatacgaggaaaaa
atatacacgttaaatcctccaccagcattcaatctgggtgacttacaagaagaagcagct
agaatctatggattcagcccatataagacgcagagtatagctgaaaaattatatctagac
gcattaattagttatccccgaacaaatagtcagaaactaccgccgacactaaactataag
gcaataatgaataagcttagtagaataaataactataaagaactagtatctaatctacta
gttgaaacgaaaggggttttaaaacctgttcaaggatccaaagacgaccctgctcatcca
gcaatttatccgacaggtgtaaaacccaaggatctcgggaaggatgagtggaaaatatat
gatttaattgttagaagatttcttgcagcatttgcttcaaaagcgaggatttctcataga
attgtttatttagaatatccaaaagatcccagtatggttttccaagcaagtggacaaaaa
attcttgatctgggttggctacgttattatccatttagcaagcccgaagaaagatttcta
cctaagttccaatatggagaaaaagttaagatagtaaaagcatcaattagaaaaacctat
acaaaacccccagaaaaaataaataagataaagattcttagatggatggagaacgtaggc
ataggaacagaagcaactagggctaggatcatagagatactgtttagtagatattatcta
agaagcgttggcggcagagttgaagcaaccgatctaggtttaggcataatagaggtgcta
atggagtattttcctgaaatcacaagtgttagtttaacacggcattttgaggaggaaatg
gaaaagattagattaggtgttaagagaagagaggaagtagtaaaagatgcaaagaataca
ttgataaaactaattgtgtcatttgataagaaaaagtaccagatcggaaaaacattatct
tatcgcttaggctatataacacccataaataaatgtatactgtgtaatcgtgaagcatat
aagaataatctctgcaaataccattaccgcgcattaaataccgtaattaaaacatatgac
gaatggaaaagaagagaaggtgttgattggaataaatacttatcaagtattaagaaatta
aagtcgacggggaaatggatcgttgaggttattcagaactttgagaaaataaaatattct
cctagcgaataa
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