KEGG   Staphylothermus marinus: Smar_1318Help
Entry
Smar_1318         CDS       T00485                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
smr  Staphylothermus marinus
Pathway
smr03030  DNA replication
smr03410  Base excision repair
smr03420  Nucleotide excision repair
smr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Smar_1318
   03410 Base excision repair
    Smar_1318
   03420 Nucleotide excision repair
    Smar_1318
   03430 Mismatch repair
    Smar_1318
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smr03032]
    Smar_1318
   03400 DNA repair and recombination proteins [BR:smr03400]
    Smar_1318
Enzymes [BR:smr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Smar_1318
    6.5.1.6  DNA ligase (ATP or NAD+)
     Smar_1318
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Smar_1318
DNA replication proteins [BR:smr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Smar_1318
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Smar_1318
DNA repair and recombination proteins [BR:smr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Smar_1318
   NER (nucleotide excision repair)
    Other NER factors
     Smar_1318
   MMR (mismatch exicision repair)
    Other MMR factors
     Smar_1318
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 YfdX DUF1474
Motif
Other DBs
NCBI-ProteinID: ABN70409
UniProt: A3DP49
LinkDB All DBs
Position
1274782..1276617
Genome map
AA seq 611 aa AA seqDB search
MAAQQSEQPRYEKDMPFRELADTFERIEIITSRTQMTVLLVNLFKKTPPEIIDKVVYLLQ
GRLWPDWKGLPELGVGEKMLIKAIALATQSTESEVESLYKSLGDLGKAAEKLKAIYEEKL
KKGAMSILAFVPVKRELTVSQVYETLSRVALATGEGSRDIKLKLLAGLLSDASPKEAKYI
IRFVEGRLRLGIGDATIMDALAIVYGGGAHARPIVERAYNLRADLGHIAKILATQGLNAL
KGIKPQVGIPIRPMLAERLNNPVEILKKVGGIAFVEYKYDGERAQIHKLGDKIWIYSRRL
ENITHQYPDVVDYARKYIKANEAIVEGEIVAYDPDTGELRPFQELMHRKRKHDIHIAIKE
VPVKVYLFDLLYVDGEDYTLKPLPERRAKLVEIIEQTETFQIAEYIRTNNPDELEKFFLK
AIEDGAEGVMIKALHKNAIYQAGTRGWLWIKYKRDYKSEMIDTVDLVVIGAFYGRGRRGG
KYGALLMASYNPDKDVFESVCKVGSGFKDEDIDKLPEMLKPYIIEHKHPRVVARMKPDVW
VTPALVAEIIGAELTLSPLHTCCLDIIKPGVGISIRFPRFIRWRPDKGPEDATTSQELLE
MYKRQLKKLSE
NT seq 1836 nt NT seq  +upstreamnt  +downstreamnt
atggctgcacagcagagcgaacagcctagatacgaaaaagatatgccatttagagaacta
gcagatacttttgagaggatagagataattacgtcaaggacacaaatgactgtattactt
gttaatttattcaagaagactcctccagaaataattgataaagtagtctacctattacag
ggcagattatggcctgactggaaaggtttaccggagctcggtgttggtgaaaaaatgctt
attaaagcaatagctcttgctacgcagagcacagagtcagaagttgaatctctctataaa
tcacttggcgatctaggaaaagcagctgagaagcttaaagctatatatgaagagaaattg
aagaagggtgctatgtctattctcgcatttgtgcctgttaaaagagaattaactgtgagc
caagtttatgagacattatcgcgtgtagcattagcaacaggagaaggtagtagggatatt
aaattaaaactattagctggtctattatcggatgcttctcctaaggaggcaaaatatatc
attagatttgtcgaaggacgcttaaggcttggtataggagacgctactataatggatgca
ttagcaatagtctatggtggaggagcacatgctagacccattgttgagagagcttataat
ctcagagccgatctagggcatatcgcaaagatacttgcaactcaaggcttaaacgcctta
aaaggtattaagccacaggtaggaatacctattaggccaatgcttgctgagagactaaat
aatccagtcgagatactgaaaaaagttggtggaatcgcgtttgtcgaatataaatatgat
ggtgaaagagcacaaatccataaattgggagataaaatatggatttactcccgtagatta
gagaatattactcatcaatatcctgacgtagtcgattatgcgagaaaatatattaaggca
aatgaagcaattgttgaaggcgaaatagtagcatacgatccagatacaggagagcttaga
cctttccaggaattaatgcatagaaaaaggaaacatgacatacatattgctataaaagag
gttccagtaaaggtgtacctatttgatctattatatgttgacggagaagattatactcta
aaacctttacctgagagacgcgctaagctagtggaaataatagagcaaacagaaacattc
cagatcgcagaatatattagaacaaataatccagacgagttagagaagttctttctcaaa
gcaatagaggatggcgctgaaggcgtaatgattaaagccttacataaaaacgctatttat
caagctggaactcgtggatggctatggatcaagtataagagagactataagagcgaaatg
atcgatacagtagacttagttgttataggagcattttatggtagaggccgtagaggagga
aaatacggcgcattattaatggcatcttataatcccgataaagacgttttcgaatcagta
tgcaaggtgggtagtgggttcaaagacgaagatatagataagctaccggaaatgttgaag
ccatacataatagagcataagcatccaagagtggtagcacgcatgaagcctgacgtatgg
gttacacctgcattagtagcagagatcataggtgcagaactaactttatcacctctccat
acatgctgtctagacattataaagcctggagtgggaatatccattagattcccaaggttt
atacggtggagaccggataagggaccagaagatgctactaccagccaagagcttctagaa
atgtataaaagacaactaaagaaattatctgaataa

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