KEGG   Stackebrandtia nassauensis: Snas_2814Help
Entry
Snas_2814         CDS       T01194                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sna  Stackebrandtia nassauensis
Pathway
sna03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Snas_2814
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sna03400]
    Snas_2814
Enzymes [BR:sna01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Snas_2814
DNA repair and recombination proteins [BR:sna03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Snas_2814
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ADD42490
UniProt: D3Q8B6
LinkDB All DBs
Position
2960142..2961218
Genome map
AA seq 358 aa AA seqDB search
MLPTPGTLPEGPGWGFEFKWDGMRTLIATADGRARMIARGGGDYASAFPDLADIADQLPE
GVIDAEIIALDASARPSFSRVAKRFSNRHPPPDLVRSVPVNLMIFDLLRLGDAEVVGQPY
WRRREVLDALELVGERWLVPPWHDDGAGTLAAALDAGLEGVVAKRLDSRYVAGRSRDWVK
VKAVDTGDVVVGGWRTAIRSLLVGTPNAAGTLTYRGRVGSGLTDAELGRFRAELAPSDAC
PFDPPPPGDHARDAIWTAPVAVVEVAFSHLTRSGLMRHPRYVRARPDKTAADIDPAAMDP
GASDSGPIDPRAIDPGASDSSTIAPAAIDRSSTDAIASDPDAIGSGLIEPDGDETGES
NT seq 1077 nt NT seq  +upstreamnt  +downstreamnt
atgctgcccactccggggacgcttccggaagggccggggtgggggttcgagttcaagtgg
gacggcatgcgcaccctcatcgcgaccgccgacggccgggcccggatgatcgcgcgcggc
gggggcgactacgccagcgccttccccgacctggccgacatcgcggaccagctgcccgag
ggggtcatcgacgccgagatcatcgcgctggacgctagtgcccggccgtcgttctcgcgg
gtggccaaacggttctccaatcgccatccccctcccgacctggtccggtcggtgccggtg
aacctgatgatcttcgacctgctgcggctgggggacgcggaggttgtggggcagccgtac
tggcggcgccgcgaggtcctggacgccctggagctggtgggggagcggtggctggtgccg
ccgtggcacgacgatggcgcggggacgctggccgccgcgctggacgcggggctggagggg
gttgtcgccaagcggttggactcccggtacgtcgcggggcgcagccgcgactgggtgaag
gtcaaggccgtggacaccggtgacgtggtggtgggcggctggcgaaccgcgatccgctcg
ctgctggtgggcaccccgaacgcggcggggaccttgacgtatcgcggccgcgtcggttcg
ggcctgaccgacgccgagctgggacgcttccgcgcggagctggccccgtccgacgcctgc
cccttcgatccgcccccgccgggagaccacgctcgcgacgcgatctggaccgccccggtc
gcggtcgtcgaggtcgcgttctcgcacctgacccgctcggggctgatgcgccacccccga
tacgtgcgcgcccggcccgacaaaaccgccgccgacatcgacccggccgcgatggatcct
ggcgcaagcgattccggcccgatcgacccgcgcgcgatcgatcctggcgcaagcgattcc
agcacgatcgccccggccgcgatcgatcgcagctcgactgatgccatcgcgagcgaccct
gacgcaatcggttccggcttgatcgagcccgacggcgacgagacgggagagtcgtga

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