Sphingomonas sp. NIC1: A7E77_02650
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Entry
A7E77_02650 CDS
T04479
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A7E77_02650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snj03021
]
A7E77_02650
03400 DNA repair and recombination proteins [BR:
snj03400
]
A7E77_02650
Enzymes [BR:
snj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A7E77_02650
Transcription machinery [BR:
snj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A7E77_02650
DNA repair and recombination proteins [BR:
snj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A7E77_02650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ANC85875
LinkDB
All DBs
Position
complement(530361..531428)
Genome browser
AA seq
355 aa
AA seq
DB search
MSVNAKNWQELKKPNGLEKKGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAAV
TSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMQGEGPKRLQLSATGPAEVKAGDIA
VSGDIEVMNPDLVICHLDEGATLNMELTADIGKGYVPATANRPADAPIGLIPVDALYSPV
RQVSYKVDPTRVGQDLDYDKLTLTIETDGTVTPEDAVAYAGRILQDQLALFVHFDDSAIT
RSSAPIGQAAAPAAGGETAGDTQQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVGK
TEAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgtcaatgcaaagaactggcaggaactgaagaagcccaacggccttgagaagaag
ggcggcgatggcaagcgcaaggcgaccttcgtggccgagccgctggagcgtggctttggc
ctgacgctcggcaacgcgctgcgtcgcgtgctgctctcgtcgctgcagggcgccgcggtc
acctcgatcaagatcgagaacgtgctgcatgagttcagcagccttgccggcgtgcgcgaa
gacgtcacggacatcgtcctgaacgtcaagcagatcgcgctcaagatgcagggcgaaggc
ccgaagcgtctccagctgtccgccaccggcccggccgaggtgaaggccggcgacatcgcc
gtgtcgggcgatatcgaggtaatgaaccccgatctggtcatctgccatctggacgaaggc
gcgacgctcaacatggagctgaccgccgacatcggtaagggctatgtgcccgcgaccgcc
aaccgtccggccgatgcgccgatcggcctgatcccggtcgatgcgctgtattcgccggtg
cgccaagtgtcgtacaaggtcgatccgacccgcgtcggtcaggacctcgattacgacaag
ctgacgctgacgatcgaaaccgacggcacggtgaccccggaagacgcggtggcctatgcc
ggccgcatccttcaggaccagctggcgctgttcgtccacttcgacgattcggcgatcacg
cgctcgtcggcgccgatcggccaggcggccgctccggcagccggtggcgagacggcgggc
gacacgcagcagatcaaccgttacctcctcaagaaggtcgacgagttggagctgtcggtg
cgttcggcgaactgcctgaagaacgacaacatcatctatatcggcgatctggtcggcaag
accgaagccgagatgctgcgtactccgaacttcggccgcaagtccttgaacgaaatcaag
gaagtgctctcgtcgatggggctccgcctgggtatggaaatccccggctggccgcccgag
aacatcgaagagatggccaagaagctcgagcaggagattatgggttaa
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