Streptomyces nodosus: CP978_19930
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Entry
CP978_19930 CDS
T06839
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
snq
Streptomyces nodosus
Pathway
snq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CP978_19930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snq03021
]
CP978_19930
03400 DNA repair and recombination proteins [BR:
snq03400
]
CP978_19930
Enzymes [BR:
snq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CP978_19930
Transcription machinery [BR:
snq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CP978_19930
DNA repair and recombination proteins [BR:
snq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CP978_19930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TarH
Motif
Other DBs
NCBI-ProteinID:
QEV40514
UniProt:
A0A0B5DE58
LinkDB
All DBs
Position
4404783..4408703
Genome browser
AA seq
1306 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWTRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGEMRNVKGE
ERSFASVAEAIMAFDAGELSLQSRVDIRFPVGTIPPRGWTPPADEEPAAGDGFGTGEWQQ
GDSFRLRTTLGRALFNELLPEDYPFVDYEVGKKQLSEIVNDLAERYPKVIVAATLDNLKA
AGFFWATRSGVTVAISDVVVPEAKKEIVKGYEAQDEKVQKQYERGLITKDERTQELIAIW
TKATNEVAEAMNDNFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKA
SFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLK
LQIAERGADGVLRKADNVETSVYARCLAEDIVVDGQVLAPAGTDLGDVLIEELVSRGVAE
VKTRSVLTCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGG
VAGDDITQGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKIVITPDDGSDETAYP
ISKRARLLVSEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIH
DKHIEIIIRQMLRRVTIIESGDAELLPGELVERSKFEHENRRVVQEGGHPASGRPQLMGI
TKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNI
RVEPTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggcctggccaccgctgacgacatc
cggcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgattcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacgcacatctggtacttcaagggcgttccgtcgcggctgggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccgcacccgtgacctgccctcgctggaggcgcatgtctccgtcgagcggcag
cagatcgagaaccgtcgcgacgccgacctggaggcccgcgccaagaagctcgagacggac
ctcgccgagctggaggccgagggcgccaaggccgatgtgcgccgcaaggtccgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgcctggac
gaggtctggacccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggttcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctggaggaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgcgccctcaagcggctgaaggtcgtctcc
gcgttcctgcagacctccaacagccccaagggcatggtcctggactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaagaggctcctggacctc
ggtgccccggagatcatcgtcaacaacgagaagcgcatgcttcaggaggctgttgacgcc
ctcttcgacaacggtcgtcgcggccgcccggtcacgggccccggcaaccgtccgctgaag
tccctcagcgacatgctgaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgtgtcgactactcggcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctggaagaggtcatcgcggagcacccggttctgctgaaccgt
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgccttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgcccggtcacgatgccgacccaggac
atggtcctcggtctgttcttcctgaccacggacggcgagatgcggaacgtgaagggcgag
gagcgctccttcgcatccgtggccgaggcgatcatggcgttcgacgccggtgagctctcg
ctgcagtcgcgcgtggacatccgcttcccggtgggcaccatcccgccgcgcggctggacc
ccgccggccgacgaggagcccgcggccggcgacggcttcggcaccggtgagtggcagcag
ggcgacagcttccggctgcggacgacgctgggccgtgcgctcttcaacgagctgctgccc
gaggactacccgttcgtcgactacgaggtcggcaagaagcagctctccgagatcgtcaac
gacctcgccgagcgctacccgaaggtcatcgtggcggcgacgctcgacaacctgaaggcg
gccggcttcttctgggccacccgctccggcgtcaccgtcgccatctccgacgtcgtcgtc
cccgaggcgaagaaggagatcgtcaagggctacgaggcgcaggacgagaaggtccagaag
cagtacgagcgcggtctgatcaccaaggacgagcgcacccaggagctcatcgcgatctgg
accaaggcgaccaacgaggtcgccgaggcgatgaacgacaacttcccgaagacgaacccg
atcttcatgatggtgaactcgggtgcgcgaggaaacatgatgcagatgcgccagatcgcg
ggtatgcgcggtctggtgtcgaacgcgaagaacgagaccatcccgcggcccatcaaggcg
tcgttccgtgagggtctgtccgtgctggagtacttcatctccacgcacggtgcccgtaag
ggtctcgcggacaccgctctgcgtaccgccgactcgggttacctcacccgtcgtctggtc
gacgtgtcgcaggacgtcatcatccgcgaggaggactgcggcaccgagcgcggcctcaag
ctccagatcgcggagcgcggcgcggacggcgtgctgcgcaaggcggacaacgtcgagacg
tccgtgtacgcgcgctgcctcgccgaggacatcgtggtcgacggccaggtgctggccccg
gccggtaccgacctgggcgatgtgctcatcgaggagctggtctcccgcggcgtcgccgag
gtcaagacccgctcggtcctgacctgtgagtccgccgtcggcacctgcgccatgtgctac
ggccgctcgctggccaccggcaagctggtcgatatcggtgaggcggtcggcatcatcgcc
gcccagtccatcggtgagcccggtacccagctgacgatgcgtaccttccacaccggtggt
gtggccggtgacgacatcacccagggtctgccgcgtgtcgtcgagctcttcgaggcccgt
accccgaagggtgtcgccccgatctccgaggcctccggccgcgtccggatcgaggagacc
gagaagaccaagaagatcgtcatcaccccggacgacggcagcgacgagacggcctacccg
atctcgaagcgcgcccgtctcctggtgagcgagggcgagcacgtcgaggtgggccagaag
ctcaccgtgggtgccaccaacccgcacgacgtgctgcgcatcctgggccagcgtgccgtc
caggtccacctggtcggcgaggtccagaaggtctacaactcgcagggtgtgtcgatccac
gacaagcacatcgagatcatcatccggcagatgctgcgccgtgtgacgatcatcgagtcc
ggcgacgccgagctgctgcccggtgagctggtcgagcgctcgaagttcgagcacgagaac
cgtcgtgtggtccaggagggcggtcacccggcctccggtcgtccgcagctcatgggtatc
accaaggcctcgctggccacggagtcctggctgtcggcggcgtccttccaggagacgacc
agggtcctcacggacgcggcgatcaacgccaagtccgactccctgatcggcctcaaggag
aacgtcatcatcggtaagctcatcccggccggtacgggcctgtcccgctaccgcaacatc
cgggtcgagccgaccgaggaggccaaggccgcgatgtactcggccgtcggctacgacgac
atcgactactcgccgttcggcaccggctccggccaggccgtgccgctggaggactacgac
tacggtccgtacaaccagtaa
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