KEGG   Streptomyces noursei: SNOUR_06535Help
Entry
SNOUR_06535       CDS       T04806                                 

Definition
(GenBank) DNA polymerase LigD, polymerase domain-containing protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
snr  Streptomyces noursei
Pathway
snr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:snr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SNOUR_06535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:snr03400]
    SNOUR_06535
Enzymes [BR:snr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SNOUR_06535
DNA repair and recombination proteins [BR:snr03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SNOUR_06535
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: NAD_binding_2
Motif
Other DBs
NCBI-ProteinID: ANZ14626
UniProt: A0A1B2GL12
LinkDB All DBs
Position
complement(1451186..1452091)
Genome map
AA seq 301 aa AA seqDB search
MSPITVVEGRRLSLTNLDKVLYPGTGTTKGEVLHYCTTTADALLPHLHDRPVSFLRYPDG
PDGQRFFTKNVPPGAPSWVKSCEVPHSRSGPARQVLLQDLASLVWAANLVVELHTPQWTC
GAPGMADRLVFDLDPGAPATVVECCAAARWLRDRLAADGLDAYAKTSGSKGLHLVVPVEP
TPADRTTAYARTLAVEAGAALGDLVTHKMARALRPGKVFIDFSQNAAAKTTATVYTLRAR
ATPTVSTPVTWDEVAGCTEPGQLTFLFNEIAGRRERYGDLHAPLLSPARARPVPRGDRRP
V
NT seq 906 nt NT seq  +upstreamnt  +downstreamnt
atgtcgccgatcaccgtcgtggaggggcggcgcctctcgctgacgaacctggacaaggtc
ctctatcccgggaccggcaccaccaagggtgaggtgctgcactactgcaccaccaccgcg
gacgcgctgctcccgcacctccacgaccgcccggtgtccttcctccgctaccccgacggg
ccggacggccagcgcttcttcaccaagaacgtgccgcccggcgccccctcctgggtgaag
agctgcgaggtcccccattcgaggtcggggccggcccgccaggtgctcctccaggacctc
gcctcgctggtctgggccgccaacctcgtcgtcgaactgcacaccccgcagtggacctgc
ggcgcgccgggcatggccgaccggctggtcttcgacctggacccaggtgcccccgccacc
gtcgtggagtgctgtgccgcagcccgctggctgcgcgaccggctcgccgccgacggcctc
gacgcctatgccaagaccagtggctccaagggcctgcacctcgtcgtgcccgtcgagccc
acccccgccgaccgcaccacggcctacgcccggacgctggccgtcgaggccggtgccgcc
ctaggggacctggtcacgcacaagatggcccgggcgctgcggccaggcaaggtcttcatc
gacttctcgcagaacgccgccgccaagaccaccgcgaccgtctacaccctgcgcgcccgg
gccaccccgaccgtctccaccccggtcacctgggacgaggtcgcgggctgcaccgaaccg
gggcaactcaccttcctcttcaacgagatcgccgggcgccgggagcgctacggcgatctg
cacgcgccgttgctgagcccggcccgggcccgtccggtgccgcgcggcgaccggcggccc
gtatag

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