Streptococcus pneumoniae SPNA45 (serotype 3): SPNA45_00006
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Entry
SPNA45_00006 CDS
T02245
Symbol
trcF
Name
(GenBank) putative putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snu
Streptococcus pneumoniae SPNA45 (serotype 3)
Pathway
snu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPNA45_00006 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snu03400
]
SPNA45_00006 (trcF)
Enzymes [BR:
snu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPNA45_00006 (trcF)
DNA repair and recombination proteins [BR:
snu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPNA45_00006 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCM07296
LinkDB
All DBs
Position
4950..8465
Genome browser
AA seq
1171 aa
AA seq
DB search
MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGE
AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
IVASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
DIFEISQLEPCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQS
ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
DDYQKLMNQYEVFERDLAQYFTEELQNNKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
QIKLDSRDKTSICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGDQISIPVEQIHL
LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
HKQVVILVPTTVLAQQHYANFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILI
GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQVYYLYNKVDTIVQKVSE
LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFLENA
DYMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANANTRTKGNAELILQI
DAYLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKS
YLDKVFVQRVERKDNKITIQFEKVTQRLFLVQDYFKALSVTNLKAGIAENKGLMELVFDV
QNKKDYEILEGLLIFGESLLEIKEFKEENSI
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccttattagatttattctcagaaaatgatcagattaaaaaatggcatcaaaat
ttaacagataagaaaagacaactaatacttggtttatcaacatctactaaggctcttgca
attgcaagcagtttagaaaaagaagataggattgtgttattgacgtcaacttatggagaa
gcagaaggacttgttagtgatcttatatctatcttgggtgaggaactcgtctatccattt
ttggtagatgatgctcctatggtggagtttttgatgtcttcacaggaaaaaattatttca
cgggttgaagccttgcgttttttgactgattcatctaagaaagggattttagtttgtaat
atcgtagcaagtcgattgattttaccgtctcccaatgcattcaaagatagtattgtaaaa
atctcagttggtgaagaatatgatcaacacgcgtttatccatcagttaaaggaaaatggc
tatcgaaaagttactcaagtacaaactcagggcgaatttagtcttcgaggagatatttta
gatatttttgaaatatcccagttagaaccttgtcgaattgaattttttggtgatgaaatt
gatggtatcaggtcatttgaagtagaaacacaattatcgaaagaaaataagacagaactc
actatttttccagctagtgatatgcttttgagagaaaaggattatcaacgaggacagtca
gctttagaaaaacaaatttcaaaaactttatcacctattttgaaatcatacctagaagaa
attctttcaagttttcaccaaaaacaaagtcatgcagactctcggaagtttttatctttg
tgctatgataagacatggactgtctttgattatattgaaaaagatactccaatattcttt
gatgattatcaaaaattgatgaatcagtatgaagtctttgaaagagacttagcgcagtac
tttacagaagaattacagaataataaagcattttctgatatgcagtatttttctgatatt
gaacaaatctataaaaaacaaagtccagtgacctttttctctaatcttcaaaagggttta
ggaaatctcaaatttgacaaaatttatcaattcaatcaatatcctatgcaggaatttttc
aatcagttttcttttctaaaagaagaaattgaacgatataaaaaaatggattacaccatt
attctgcagtctagcaattcaatgggaagtaaaacattggaggatatgttagaggaatat
cagattaaattggattctagagataagacaagtatctgtaaagaatctgtaaatttaata
gagggtaatctcagacatggttttcattttgtagatgaaaagattttattgataactgaa
catgagatttttcaaaagaaattaaagcgtcgttttcgaagacaacatgtttcaaatgca
gagagattaaaagattacaatgaacttgaaaaaggggactatgttgtccatcatatccat
gggattggtcaatatctaggaattgaaaccattgaaatcaagggaattcatcgtgattat
gtcagtgtccaataccaaaatggtgatcaaatttctattcccgtggaacagattcatcta
ctgtccaaatatatttcaagtgatggtaaagctccaaaactcaataaattaaatgacggt
cattttaaaaaggccaagcaaaaggttaagaaccaggtagaggatatagctgatgattta
atcaaactctactctgaacgtagtcagttgaagggttttgctttctcagctgatgatgat
gatcaagatgcctttgatgatgctttcccttatgttgaaacggatgaccaacttcgtagt
attgaggaaatcaagagggatatgcaggcttctcagccaatggatagacttttagttggg
gatgttggttttggaaagactgaagttgctatgcgtgcagcctttaaagcagtcaatgat
cacaaacaggttgtcattctagttccgacgacggttttagcgcaacagcactatgcgaat
tttaaggaacgattccaaaattttgcagttaatgttgatgtgttgagtcgctttagaagt
aaaaaagagcagactgcaacacttgaaaaattgaaaaacggtcaagtcgatattttgatt
ggaacacatcgtgttttgtcaaaagatgttgtgtttgctgatttgggcttgatgattatt
gatgaggaacagcgatttggtgtcaagcataaggaaactttgaaagaactgaagaaacaa
gtggatgtcctaaccttgaccgctacgccaatccctcgtaccctccatatgtctatgctg
ggaatcagagatttgtctgttattgaaactccgccgactaatcgctatcctgttcagacc
tatgttttggaaaagaatgatagtgtcattcgtgatgctgtcttgcgtgaaatggagcgt
ggaggtcaagtttactatctttacaacaaagttgatacaattgttcagaaggtttcagaa
ttacaggagttgattccggaggcttcgattggatatgttcatggtcgaatgagtgaagtc
cagttggaaaatactctattagactttattgagggacaatacgatatcttggtgacgact
actattattgagacaggggtggacattccaaatgctaatactttatttcttgaaaatgcg
gactatatgggcttgtcaaccttatatcagttaagaggaagagtcggtcgtagtaatcgt
attgcttatgcttatctcatgtatcgtccagaaaaatcaatcagtgaagtctctgaaaag
agattagaagcgattaaaggatttacagaattgggctctggctttaagattgcaatgcga
gatctttcgattcgtggagcaggaaatcttttaggaaaatcccagtctggtttcattgat
tctgttggttttgaattgtattcgcagttattagaggaagctattgctaaacgaaacggt
aatgctaacgctaacgctaacacaagaaccaaagggaatgctgagttgattttgcaaatt
gatgcctatcttcctgatacttatatttctgatcaacgacataagattgaaatttacaag
aaaattcgtcaaattgacaaccgtgtcaattatgaagagttacaagaggagttgatagac
cgttttggagaatacccagatgtagtagcctatcttttagagattggtttggttaaatca
tacttggacaaggtctttgttcaacgtgtggaaagaaaagataataaaattacaattcaa
tttgaaaaagtcactcaacgactgtttttagttcaagattattttaaagctttatccgta
acgaacttaaaagcaggcatcgctgagaataagggattaatggagcttgtatttgatgtc
caaaataagaaagattatgaaattttagaaggtctgctgatttttggagaaagtttatta
gagataaaagagtttaaggaagaaaattccatttga
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