Solibacillus sp. R5-41: CSE16_01285
Help
Entry
CSE16_01285 CDS
T05144
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sob
Solibacillus sp. R5-41
Brite
KEGG Orthology (KO) [BR:
sob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sob03016
]
CSE16_01285
Enzymes [BR:
sob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CSE16_01285
Transfer RNA biogenesis [BR:
sob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CSE16_01285
Prokaryotic type
tRNA splicing ligases
CSE16_01285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Choline_sulf_C
Motif
Other DBs
NCBI-ProteinID:
ATP42334
UniProt:
A0A2D1SYZ2
LinkDB
All DBs
Position
258785..259990
Genome browser
AA seq
401 aa
AA seq
DB search
MIEVKGQYTDAVIYTNNPQEAAILQIKELVNQSFMQGAKVRIMPDYHAGKGCVIGTTIVL
NDRVVPNLVGVDVGCGVLVSEIGKGKVDFNKLDEIIRSFVPSGNAIHENVDKANLTETYT
NEAFIARGLQDDYTNRSLGTLGGGNHFVEIAQDDTGIHYLLIHTGSRYVGAKVASWHQKR
AFESLQRADLTEKMNQLKEEGRHQEIQEMIQAFKLENPVVPKDLAYLEGDLFTDYIADMK
LAQQFARDNRKVIAQIIAEHMKWDYQSQFDSVHNYIDTDSMILRKGAVRAASGEQLVIPM
NMRDGSLICVGKGNAEWNESAPHGAGRIYSRKAAMKNLSMDDFNETMSGIWTTSVSEETL
DEAPMAYKPMQEIVDQIGETVEIQKHITPVYNFKASDKWKK
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagtaaaaggtcagtacacggatgcagtgatttatacaaataacccgcaagaa
gctgccattttgcaaatcaaggagctcgtcaatcaatcctttatgcaaggggcaaaggta
cgcattatgccagattaccatgcagggaaaggttgtgtaattggtacgacgattgtattg
aatgatcgggttgtgccaaatttagtcggtgtggatgttggctgtggtgtgctcgtttca
gaaattggcaagggaaaggttgattttaataagcttgatgaaatcattcgtagctttgtc
ccaagtgggaatgcaattcatgaaaacgtagacaaggccaatctaaccgaaacatataca
aatgaagcttttattgcacgcggcttacaagatgattatacgaatcgttcgctcggtacg
cttggtggaggcaatcatttcgtagagatcgcacaagatgatacaggcatacactatttg
ctcattcatacagggtcacgttatgtaggtgcgaaggtggcaagctggcatcaaaaacgt
gcatttgagtcattgcagcgtgcggatttaacggaaaagatgaatcagttaaaagaggaa
ggccgtcatcaggaaattcaagagatgattcaagcatttaagttagaaaatcctgttgta
ccgaaagatttagcttatttagaaggcgatttgtttacggattacattgcagatatgaaa
ctagcacagcaattcgcacgagataatcgcaaggtcattgcacaaataattgctgaacat
atgaaatgggattatcaatcacagtttgattcagtgcataattacattgatacggattcg
atgattttacgtaaaggggctgttcgcgcggcaagtggggagcagttagtcattccgatg
aatatgcgtgatggctcattaatttgtgttgggaaaggtaatgcagagtggaacgaatca
gcaccccacggagcaggacgtatttattcacgaaaagcagcgatgaaaaacttatcaatg
gatgattttaatgagacaatgagtggcatttggacgacttctgtatcagaagaaacatta
gatgaagccccaatggcatacaagccgatgcaagaaattgtcgatcaaattggtgagacg
gtcgaaatccaaaagcatattacgccggtatataatttcaaggcgagcgataaatggaag
aaatga
DBGET
integrated database retrieval system
