Solenopsis invicta (red fire ant): 105202499
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Entry
105202499 CDS
T03916
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03022
Basal transcription factors
soc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105202499
09124 Replication and repair
03420 Nucleotide excision repair
105202499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soc03021
]
105202499
03400 DNA repair and recombination proteins [BR:
soc03400
]
105202499
Enzymes [BR:
soc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
105202499
Transcription machinery [BR:
soc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105202499
DNA repair and recombination proteins [BR:
soc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105202499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
TniB
Motif
Other DBs
NCBI-GeneID:
105202499
NCBI-ProteinID:
XP_039309044
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All DBs
Position
8:23401338..23433631
Genome browser
AA seq
792 aa
AA seq
DB search
MGPPKRFKKDNGKWKKRKDDYDEYNDDDSIDSNEADGVPDAAKNDVEKQDECAIEDEFGA
KDYRSQMILKPDCSSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKL
TAYSLYAAVSVGLQTQDIIEYLKRLSKTSIPDGIIEFIKLCTLSYGKVKLVLKHNKYFIE
SPFPEVLQRLLKDPVIQECRLRKLTEDMESDDIVTNVQAKMKAPQFGSKALVNTSVSSKT
NLEIESDQILTETIPEDITAFYDKIDKEDEDEEEDQELKTVSFEVNQEKIEVIQKRCIEL
EHPLLAEYDFRNDTINPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKS
LVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMGCGILI
TTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLT
ATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLACKM
SRKLLLYVMNPNKFRCCQYLIRYHERRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS
ERIQILQNFKFNMKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK
KGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPDLMYGNR
EEQGQLLQQVLTASDTDADEERIPGEGPRPIVRKAGTMVSMSGADDAIYYEYKKAPGSST
ANKHPLFKKFRT
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaccaaagcgctttaaaaaagataatggtaaatggaaaaagcgcaaggacgat
tatgatgaatacaacgatgatgattccatagacagtaatgaagcagatggtgtgccagat
gcggctaaaaatgatgtggaaaaacaagatgaatgcgcaattgaggatgaatttggagca
aaagattatcgctcgcaaatgattttaaaacctgattgttcatctagaccattatgggtg
gcaccaaatggacatattttcttggaatcattttctcctgtgtataaacatgcccatgat
tttttaatagctatatcagaacctgtatgtcggccagaacatattcacgaatataaattg
actgcatattcactttatgccgctgttagtgtaggcctacaaacacaagacataatagag
tatttaaagagattgagtaagactagtattcctgatggtataatcgagtttatcaaattg
tgtacattgtcctatggaaaagttaaacttgtcttaaaacataataaatactttattgaa
tcaccattccctgaagtgctacaaagattactgaaagacccagtaattcaagaatgtcga
ttgagaaaactcacagaagatatggaaagtgatgatattgttacgaatgttcaagccaaa
atgaaagctcctcagtttggatcaaaagcactcgtaaatacgtctgtgtctagtaaaaca
aatttagagattgaatctgaccaaatattaacagaaaccattccagaagatataactgct
ttttacgacaaaattgacaaagaagacgaagatgaggaagaagatcaagaattgaaaaca
gttagttttgaagtaaatcaggagaaaattgaagttatacaaaaacggtgcattgaacta
gaacatcctttattagcggaatatgattttcgcaatgataccataaatcctgatataaat
atcgatttgaagccatcagctgtattaagaccttatcaagaaaaaagtttacggaaaatg
tttggtaatggccgtgctagatccggagtaatagtcttaccttgtggcgctggtaaaagt
ttagttggagttacagcttgttgtacagtacgtaaacgcgccctagtattgtgcaactct
ggtgtatccgtagaacaatggaagcagcaatttaaaatgtggtccaccgccgacgattcg
atgatttgccgttttactagcgaagcgaaggataaaccaatgggctgtggaatactaata
actacatattctatgatcacgcatactcagaaacgttcgtgggaagctgagcaaacgatg
cgttggcttcaagaacaggagtggggtattatggtcttggatgaggtgcataccattcct
gcgaaaatgtttcgtagagtattaacaatcgttcagtctcattgtaagttaggtttaacg
gctacgctcttgcgagaggatgacaaaattgccgatttgaattttttaattggtcctaaa
ttatacgaggctaactggttggaattgcaaaaaagaggatttattgcaagagtacaatgt
gcagaagtttggtgtcctatgacaccagaattttacagagaatatcttgcttgcaaaatg
agcagaaaactgttattgtatgtgatgaatccaaataaatttcgctgttgccaatattta
attcgatatcacgagagacgtggcgataagacaattgtcttctccgataatgtatttgca
ttaaaacactacgctattaaaatgaataagccatacatttatggtcctactagtcagagt
gaaagaatacaaattttacaaaattttaaatttaatatgaaagtgaatacaatatttgtc
agcaaagtagcagatacttcttttgatttacccgaggctaatgtcttgattcaaatttca
tcccatggtgggtctagaaggcaagaagcacaacgattaggacgtattcttagagctaaa
aaaggtgcaattgcggaagaatataacgcattcttttatacactcgtatcacaagataca
atggaaatgaattactcgagaaaacgtcaacggtttcttgtgaatcaaggttacgcttat
aaagtcatcacaaaacttgcaggcatggatgaggagcctgatttaatgtatggaaatcga
gaggaacaaggtcaattattgcaacaagtgttaacagctagtgatacggatgcagatgag
gaaagaatacctggcgaaggcccaagaccaattgtacgtaaagctggtacgatggtatcg
atgtcaggagcggacgatgccatttattacgaatacaagaaagcccctggctcatcgacg
gcaaataaacatcctctttttaaaaaattcagaacataa
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