Spinacia oleracea (spinach): 110795645
Entry
110795645 CDS
T05137
Definition
(RefSeq) histone deacetylase 5
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
soe
Spinacia oleracea (spinach)
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
soe01009
]
110795645
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110795645
04131 Membrane trafficking [BR:
soe04131
]
110795645
03036 Chromosome and associated proteins [BR:
soe03036
]
110795645
Enzymes [BR:
soe01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
110795645
Protein phosphatases and associated proteins [BR:
soe01009
]
Protein Ser/ Thr phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110795645
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic Type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
110795645
Membrane trafficking [BR:
soe04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
110795645
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic Type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
110795645
SSDB
Motif
Pfam:
Hist_deacetyl
Other DBs
NCBI-GeneID:
110795645
NCBI-ProteinID:
XP_021856362
LinkDB
Position
Unknown
AA seq
644 aa
MEEGGSSERNDRVRQRVGLVYDEKMCNHNTPDGEDHPECPDRIRVIWNKLRNSGLIDRCV
VLNAKEAEDKYVQSVHSKRHVDLIRNISSKRFDSRRDRTASKYNSIYFNKGSSEAAYLAA
GSVIEAADKVAKGELNSAFAIVRPPGHHAEENEPMGFCLFNNVAVAASYLLNERPELGIH
RILIVDWDVHHGNATQKMFWKDSRVLFFSVHRHDFGCFYPGTDDGSHTMIGEGPGEGYNI
NVPWEHGRCGDADYFAAWDHVLIPVVKEFNPDMIIVSAGFDAAVRDPLGGCCISPYGYSV
MLRKLMDFAQGKILLSLEGGYNLQSLADSAHACVQVLLDEKPIIGSSEAYPFESTWRVIE
NVRQKLSVFWPSLSDELPKKLTSQKASTPQPLTDVSSESESEDIEEAIKSIIQPLSELKF
DEDQKDDSASWRTEHKLTDIWYASFGSNMWKPRLLCYIQGGQVEGMQKPCSGSMDRSPPK
DVMWKTVPHRLFFGRDYTNTWGPGGVAFIHPESSPVEKAYICMYKLTLEQFNDILFQENC
SSCDADAPWFSSEALNAIKNRGSVSIVKGGWYHNVVFLGEEQGVPILTMTCDLHDVQAFK
SLEVPQCAPSNAYVNTLIRGLSEGGQLSEEEVLAYIDKAAATSL
NT seq
1935 nt
+upstream
nt +downstream
nt
atggaggaaggaggaagttccgagcgaaatgatagggtgcggcaacgtgtagggttagtt
tatgatgaaaaaatgtgcaaccataacactcctgatggtgaagatcaccctgaatgtcct
gatcgaattagggttatttggaacaaacttcgcaattccggtctcattgataggtgtgtt
gttctgaatgccaaggaagcagaagataaatacgtacaatctgttcattccaaaaggcat
gttgatctgattcgtaatataagctccaagcggtttgattctcgcagggatagaaccgct
tcaaaatacaattccatttattttaacaaaggttcatcagaagcagcttatttagctgca
ggctctgttatagaggcggcagataaagtagccaaaggggagctcaattctgcttttgca
attgtgaggcctcctggccatcacgctgaggaaaacgagcccatgggtttttgcctgttc
aataatgtggctgttgcagctagttatctgctgaatgaaagaccagaattaggcattcac
agaattttgattgttgattgggatgttcatcatggcaacgccactcagaaaatgttttgg
aaggattctcgtgttcttttcttctcggtacataggcatgactttggatgtttctatcct
ggaactgatgatggctctcatactatgattggagaaggaccaggggagggatacaacatt
aatgttccctgggaacatggtcgctgtggtgatgcagactattttgctgcttgggatcat
gtattgatcccagttgttaaagaattcaacccggatatgattatagtttctgccgggttt
gatgcagctgtccgtgatcctcttggcggttgttgtatttctccatatggctactctgtt
atgttgagaaagttaatggattttgctcaaggtaaaattttactttctctggaaggcggg
tacaatcttcaatctttggcggattccgctcatgcatgtgtgcaagtattgttagatgaa
aagccaatcatcggatcttctgaggcatatccatttgaatcaacatggcgcgtcatagaa
aatgttcggcaaaagttaagtgtgttttggccaagcctctccgatgaattaccaaagaag
ttaacaagccagaaagcgtctacgcctcagccactaactgatgtgagctctgagtctgaa
agcgaagatattgaggaagctatcaagagtattatacaacccctttcagaactgaaattt
gatgaagatcagaaggatgattcagcttcctggcgaacggagcacaagctaactgatatt
tggtacgcatcctttgggtcaaatatgtggaaaccgaggcttctctgctatatccaaggt
ggacaggtggaaggtatgcaaaagccatgttctggttccatggacagaagccctccaaaa
gatgtcatgtggaagactgttcctcatagattgttctttggccgtgattacacaaataca
tggggtcctggtggagttgctttcattcaccctgaaagtagtccagtggaaaaagcttat
atctgcatgtataaacttacgctagagcagttcaatgatattttgtttcaagaaaattgt
tcaagttgtgatgctgatgctccttggtttagttcggaagctctaaatgctattaaaaat
aggggatccgtctccattgttaagggaggttggtatcataatgtagtctttttgggcgag
gagcagggtgttccaatactgaccatgacgtgtgatctgcatgatgtacaggccttcaaa
tctttagaagtaccacaatgtgctcctagcaatgcatatgtcaataccttaatcagggga
ctatccgaaggaggacagctttctgaagaagaagtgttggcctacatagataaagctgct
gctacatcactctga
DBGET
integrated database retrieval system
