KEGG   Spinacia oleracea (spinach): 110801605Help
Entry
110801605         CDS       T05137                                 

Definition
(RefSeq) DNA ligase 6 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03030  DNA replication
soe03410  Base excision repair
soe03420  Nucleotide excision repair
soe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110801605
   03410 Base excision repair
    110801605
   03420 Nucleotide excision repair
    110801605
   03430 Mismatch repair
    110801605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:soe03032]
    110801605
   03400 DNA repair and recombination proteins [BR:soe03400]
    110801605
Enzymes [BR:soe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110801605
    6.5.1.6  DNA ligase (ATP or NAD+)
     110801605
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     110801605
DNA replication proteins [BR:soe03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    110801605
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     110801605
DNA repair and recombination proteins [BR:soe03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     110801605
   NER (nucleotide excision repair)
    Other NER factors
     110801605
   MMR (mismatch excision repair)
    Other MMR factors
     110801605
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C Lactamase_B_2 UBA_4 RMMBL
Motif
Other DBs
NCBI-GeneID: 110801605
NCBI-ProteinID: XP_021862655
LinkDB All DBs
Position
Unknown
AA seq 1457 aa AA seqDB search
MTEKQKASFGAQILIHRHQDQHHFNKPFKQNAPIATTKTAVRTTMSTAKTLTLNTSERYL
QSQNPLPSSSPSQLPSFPANFPPSKLIPKTRFIIDGFRHSGEFSISYFLSHFHADHYTGL
TSTWSRGIIFCSVTTARLVVKVLGVSALSVIGLPINETVVIDNCEVTLIDANHCPGAVQF
LFKVPVSGGKFERYVHTGDFRFCSDMKLIPFLSEFVGCDAVFLDTTYCDPKFVFPVQEES
IDYVVSVIERSRSENRNASKSVLFLVATYVIGKERILLEIARRCDCKIHVDSRKMEILRE
LGYENEGVFTEDESSSDVHVVGWNVLGETWPYFRPNFMKVNEIMVGKEYKKVVGFVPTGW
TYEVKKNKFAVRTKDSFEIHLVPYSEHSNYNELREYVKFLKPKRVLPTVGFDVENVDSKH
ALKMQKHFAGLVDEMANKQEFLMGFYRVPQGKGKVKVDDLAPELDKDIEQFKEEFDVCEL
KNGREADSGSTCSVASTHEPDSQDLTPFSDKEKDEIMQELRDCLPVWVSVDQLLELVKTY
GRNIVDAVSHFYEHETEFHERSGESLPSSQKSESPCTKLLNPPSVESSLQTPVKSPNQKA
KFPPLKQSVASSVSPGKRKKNPQNKKNKKGKLNSNLESGGIKQSTITKFFSKGSRVCQGI
TATPLSGISTEDKSLTSEHSVKQYKEELEQFIQIIDGSESIKGYAAELLEKAEGNVGLAL
DMYYNNSEVHLGGNQKGVDASSKSLPCEGLEESISSQGKERSEAGNKVYQSAQDSLADST
AVNYVSLPPETYSPIEHACWKHGQPAPYIHLARTFDIVEGERGKIKATSILSNMFRSLLA
LSPDDVLPAIYLCTNKIAADHENMELNIGGSLVASALEEACGINRAKIREMYNNFGDLGT
CYSIISHYHHSLCIVIMCMILNLIGDVAQECRKTQSLLLPPSPLLIRDVFSILRKISVQT
GSGSAGRRKSLIVSMMRSCREKEMKFLVRTLVRNLRIGAMMRTVLPALAQAVALNGYDEA
GKVPKELLQGLSAAAVEVYNILPDLNLLVPSLMSEGIKFSTTTLTMVPGIPIRPMLAKIT
NGIAQALKLFQNKAFTCEFKYDGQRAQIHKFDDGSVRIFSRNGDEMTTKFPDLVHIIQES
CKTSAESFIIDAEVVGIDRNKGIKFLSFQELSARERGSKASLVSLDRIKVDICVLVFDVM
FVNGEKLLAVPLRQRRQCMNDLFKGEKPGFLEYAKETTVEADEARPDCEATLTKINAFLE
DAFQSSCEGIMVKSLDVDAGYFASKRADSWLKVKRDYMDGVGDSLDLVPIGAWHGNGRKA
GWYSPFLMACYNPDTEEYESLCRVMTGFSDAFYKEMKDLLSGDKILTRKPLYYRTDEVPD
MWFSAEMVWEIRGADLTVSPVHKAAVAIVHPSRGISMRFPRFVRSLSDRRPEDCSTSTEV
AEMFHSQTRKMDLSGAR
NT seq 4374 nt NT seq  +upstreamnt  +downstreamnt
atgaccgaaaaacagaaagcatcttttggcgcacaaatcctaatccaccgccaccaggac
caacaccatttcaacaaacccttcaaacaaaatgctccgatagcaaccaccaaaaccgcc
gtcaggaccaccatgtctaccgccaaaaccctaaccctaaatacatccgaacgctatctt
caatcgcaaaacccccttcctagctcatctccgtcgcaactcccttcatttcccgccaat
ttccccccctcaaagctcatccccaaaactcgcttcatcatcgatggcttccgacattct
ggcgaattttctatctcctacttcctctcacacttccacgctgatcactacactggcctc
acttcaacgtggtctcgaggtatcatcttctgctctgtaaccaccgctcgcctcgttgtc
aaagttctcggtgtttcggcactgtccgttatcggattgccaattaacgagaccgttgtt
atagacaattgtgaggtaactttaattgatgctaatcactgccctggtgctgttcaattt
ctgtttaaagttcctgttagtggtggtaaatttgagcgttatgttcatactggtgatttt
aggttctgtagtgatatgaagttgataccttttttaagtgaatttgttggttgtgatgct
gtttttctcgatacaacgtattgtgatcccaaatttgtgttccctgtgcaagaggagtcg
attgattatgtagttagtgtgatagaaaggagtaggagtgagaataggaatgctagtaaa
agtgttttgtttcttgttgcgacatatgtaatcggaaaagagaggattttgttggaaata
gcgcgtaggtgtgactgtaagatccatgtagatagtaggaagatggagattttgcgggag
ttaggttacgagaatgaaggggtgtttacggaagatgaatcctctagtgatgttcacgtt
gttgggtggaatgttttgggtgagacttggccatattttcggcctaatttcatgaaggtg
aatgaaattatggttggaaaagagtataagaaggttgtgggatttgttcctactggatgg
acttatgaagtgaagaaaaacaagtttgcagtaagaacaaaagattcgtttgagattcat
ctggtgccttacagtgaacattccaattacaacgagcttagagaatatgtgaagtttttg
aaaccaaagcgtgtgcttcctacagttggctttgatgttgagaatgtggacagcaaacat
gctctaaaaatgcaaaagcattttgcaggattggtggatgagatggccaataagcaagaa
tttttgatgggtttttaccgtgtaccccagggaaaaggaaaggtcaaggtagatgatttg
gcacctgagttggacaaagacatagaacaattcaaagaggagtttgacgtgtgcgagctg
aaaaatggtcgtgaagctgactctggttccacgtgctctgtagcttctacgcatgaacct
gattcacaagatttaaccccttttagtgataaggaaaaagatgagatcatgcaagagcta
cgggattgtttgcccgtatgggtttctgtagatcagttgctagaacttgtcaaaacatat
ggcagaaatattgttgatgctgtatcgcatttttatgaacacgaaacagaatttcatgag
cggagtggagaatctcttccttcatcacaaaagtcagaaagtccttgcacaaaacttctt
aatcctccttctgttgagagcagtcttcagacaccggtgaagtcacctaatcaaaaggcc
aaatttccgccattgaagcagtcagttgcaagcagtgtttctcctggaaaaagaaagaaa
aatcctcaaaataagaagaataagaagggaaaattaaactcaaatcttgaatctggtggc
ataaagcaatctacaataaccaaatttttcagtaaaggtagtagggtttgtcagggaatc
accgctacccctttgtctgggataagtactgaggacaagagtctaacttctgaacattca
gttaaacaatataaggaagagctggagcaatttattcagataattgatggcagtgaatca
ataaaaggttatgctgctgaactgttagaaaaggctgagggaaatgtaggtttggcactg
gatatgtattacaataattctgaagttcaccttggtggtaatcaaaaaggggtagatgct
agtagcaaatcactaccatgtgaaggtctagaagaaagcatctctagccaagggaaagaa
aggtctgaagctggcaacaaggtttatcaatctgcacaagattcattggctgacagtact
gctgttaactatgtatcactaccaccagagacgtattctccaatagaacatgcttgctgg
aagcacggtcagcctgctccatatatacacttggcccggacttttgacattgttgaaggt
gaaaggggcaaaattaaagctacatcaatactttccaatatgtttagaagtttgctggct
ttgtctcctgatgatgttctacctgctatttatctctgcacaaataagatcgccgctgac
catgaaaatatggaactaaacattggtggaagtttggttgcatctgccctagaagaggca
tgtggaattaatagagctaagataagggaaatgtacaacaattttggtgatcttggtacg
tgttactcgataatttctcattatcatcactctttgtgtatagtaatcatgtgcatgata
ctgaatctaataggtgatgttgcacaagagtgtcggaaaacacagtcactacttcttcct
ccttcaccccttctgattcgagatgtattttccatacttcggaaaattagtgtacagaca
ggcagtggaagtgcaggtaggaggaaaagcctaattgtcagtatgatgcgatcttgcaga
gagaaggaaatgaagtttcttgtcagaactttggttaggaacctgcgaattggagcaatg
atgagaacagttcttcctgcattggctcaagcagttgctctgaacggttatgacgaagca
ggaaaagttccaaaggaattgcttcagggcctttctgctgctgctgttgaagtttataat
attcttccggatttgaatttattggtaccttctcttatgagcgaaggcataaagttttcc
accaccacgttgactatggtaccaggcattcctatcaggcccatgcttgctaaaataact
aatggaattgcgcaagcactgaagctattccagaataaagctttcacctgtgagtttaaa
tatgatggtcaacgcgcccaaattcacaaatttgatgatggttctgtgcgcatcttttca
agaaatggggatgagatgactacaaaatttccagacttggtgcatattattcaggaatca
tgtaaaacttccgctgaatctttcattattgatgcggaggtggttggaattgatcgcaac
aaaggaatcaagtttttatcctttcaagaactatctgccagagagagagggagcaaagct
tccttggtttcattggatagaataaaggttgacatttgtgtccttgtgttcgatgtcatg
ttcgtcaatggggagaagctgttggctgtcccactccggcaaaggcggcagtgcatgaac
gatctttttaaaggggaaaagcctggttttttggaatatgcaaaggaaacgactgtggaa
gcagacgaagctcgtccagactgtgaagccactttgacaaagataaatgctttccttgaa
gatgcatttcagtcttcttgtgaagggattatggttaagtcactggatgttgatgctggc
tactttgcttcaaaacgggctgattcatggttgaaggtaaagcgagattatatggacggt
gtaggggactcccttgatttagttcccattggtgcttggcatggcaatgggagaaaggca
ggatggtatagtccatttcttatggcttgttacaatcctgatacagaggaatatgaaagt
ttatgtcgtgtaatgacagggttttctgatgctttctacaaagagatgaaagatttactc
tccggagacaaaatattgaccagaaagcccttgtattaccgaacagatgaagttccggat
atgtggttttcagctgaaatggtgtgggagataagaggtgcagacctcactgtatcacct
gttcacaaggctgcagttgcaatcgttcatccttcacgtggaatttctatgaggtttccg
agatttgtccgctctctttcggacagacgaccagaagattgcagtacctctacggaagtt
gccgaaatgtttcattctcagactcgaaagatggatttaagtggtgctcgttag

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