Serratia odorifera: NCTC11214_04301
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Entry
NCTC11214_04301 CDS
T06612
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent helicase HrpA [EC:
5.6.2.6
]
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
NCTC11214_04301
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC11214_04301
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
NACHT
PhoH
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
VDZ63015
UniProt:
A0A447KYF9
LinkDB
All DBs
Position
1:3933230..3935965
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AA seq
911 aa
AA seq
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MKSSLAALSSQLDDLMLRDQQRLQRRLLGARKVKNPEALQAVAAEIEHDIAAALQKVQSR
AASCPDIRYPANLPVSQKKQEILKAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVKGL
IGHTQPRRLAARTVANRIADELDTPLGGSVGYKVRFNDQVGEQSLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIVEVSGRTYPVEVRYRPVVDDADDGERDQLQAIFDAVDELGRAGPGDILIFMSGEREIR
DTADALNRLNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEQDFLSRPAFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAINTLENGHYQ
LTPQGRQLAQLPIDPRLARMVLEARNSGSVREIMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFIAFVNLWNYLQEQQKALSSSQFRRLCRTDYLNYLRVREWQDIYTQLRQVV
KELGLPINSEPSDYRSVHLALLTGLLSHIGQKDADKQEYSGARNARFAIFPGSGLFKKPP
KWVMVAELVETSKLWGRIAARIEPEWIEPLAQHLVKHHYSEPHWSKSQGAVMASEKVTLF
GLPIVAARQVNYSNLDPLLCRELFIRHALVEGDWQTRHAFFSANLKLRAEVEELEHKSRR
RDILVDDETLFSFYDRRIPSDVVSGRHFDRWWKQTARQQPELLNFEKEMLIKQGANQISA
LDYPNFWHQGNLKLRLTYQFEPGTDADGVTVHIPLAILNQVDDAGFEWQIPRYSARAGDC
VDQIAAQAGSP
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcgctcgcggcattgtcatcgcaattggatgatctgatgctccgtgatcaa
cagcgtctccagcgtcggctgcttggcgcacgaaaagtcaaaaatcccgaagctctgcag
gccgtcgccgccgagatcgaacacgacatcgccgccgcgttgcagaaagtgcaatcgcgt
gccgcctcatgtccagatatccgctatccggcgaacctgccggtcagccagaaaaaacag
gagatcctcaaggcgatccgcgaccatcaggtggtgatcgttgccggggaaaccggctcg
ggcaaaaccacccagttaccgaagatgtgcctggaactcgggcgtggggtcaaagggttg
atcggccatacccagccgcgccggctggcggcgcgtaccgtcgccaaccgcattgccgat
gagctggacacaccgctcggtggcagcgtcggctataaagtgcgttttaacgatcaggta
ggtgagcagtcgctggtcaaactgatgacagacggcatcctgctggcggaaatccagcag
gatcggctgctgatgcaatacgacacgctgattatcgatgaagcgcatgaacgcagtctg
aatattgatttcattcttggttatctgcgcgaactgttgcccaagcgcccggatttaaag
gtgatcataacctcggcaaccatcgatccccagcgtttttcccgccacttcaacaatgcg
ccgatcgtcgaggtttccgggcgtacctatccggttgaagtgcgttatcgaccggtggtt
gacgacgccgatgatggcgagcgcgatcaactgcaggcgattttcgatgcggtagacgaa
ctggggcgcgccgggccgggagatatcctgatctttatgagcggtgagcgtgaaattcgc
gacaccgccgatgcgctcaaccggctcaatctgccgcacaccgaggtgttaccgttgtat
gcacggctgtcgaacagtgagcagaaccgggtattccagtcgcaccacggtcgtcgcatc
gtgctggcgaccaacgtagcggaaacttcgctcaccgtaccgggcatcaaatacgtgatc
gatcccggcactgcgcgcatcagccgctacagcttccgcaccaaagtacagcgcctgccg
atagaaccgatatcccaggcgtcggccaaccagcgtaaagggcgttgcggtcgcgtttcg
gaagggatttgcattcgtctgtattcggagcaggatttcctgtcgcgaccggcgtttacc
gacccggaaatcctgcgaaccaacctggcttcggtcattttgcagatgacgtcgctgggt
cttggcgatattgccgcattcccgttcgttgaagcgccggataagcgcaacatccaggat
ggcgtccggctgctggaagagctcggtgcgatcaacacgctggaaaatggccattaccaa
ctgacgccgcaggggcgacagctggcgcagttgccgatcgatccgcgtctggcgcgcatg
gtgctggaggcgcgtaacagcggcagcgtacgcgaaataatgatcattaccgccgcgctg
tcgattcaggatccgcgtgaacggccgatggacaaacagcaggcctccgacgaaaagcac
cggcgctttgccgacaaggattcggatttcatcgccttcgtcaacctgtggaactacctg
caagaacagcagaaagcgctgtcatccagccagttccgccggttgtgtcgtacggattat
ctcaactatttgcgggtgcgcgaatggcaggacatctatacccagcttcgccaggtggtg
aaggaactgggtttgccgatcaacagcgagccgtctgattaccgcagcgtgcatctggcg
ctattgaccggtttactgtcgcatatcggccagaaagatgccgacaaacaggaatacagc
ggggcgcgcaacgcgcgttttgccatcttccccggttctggactgttcaagaagccgccg
aaatgggtgatggtggcggaactggtggaaaccagcaaattgtgggggcgcattgccgct
cgcatcgaaccggaatggatcgaaccgctggcacagcatctggtcaagcaccactacagt
gagccacactggtcgaaatcgcaaggggcggtgatggccagcgaaaaagtgacgctattc
ggcctgccgatcgtcgccgcgcggcaggtcaattacagcaacctcgatccattgctatgc
cgtgagctgtttatccgccatgcactggttgagggcgattggcagacgcgccacgcattc
ttcagcgccaacctcaagctgcgcgccgaagtggaagaactggaacataaatcacgccgg
cgtgacattctggtggatgatgagacgttattcagcttctacgaccggcgtattccgtcg
gacgtggtgtcgggacgtcactttgatcgctggtggaaacagacggcacggcagcagccg
gagctgctgaattttgaaaaagagatgctgatcaagcagggtgccaatcagatcagcgcg
ttggattacccgaacttctggcatcagggcaacctcaagctgcggctgacctatcagttt
gaaccgggcaccgatgcggatggcgtcacggtgcacatcccgttggcgatcctcaatcag
gtcgacgacgcgggctttgaatggcaaatcccccggtattcggcgcgagctggtgattgc
gttgatcaaatcgctgcccaagccggttcgccgtaa
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