KEGG   Sulfolobus solfataricus 98/2: Ssol_1170Help
Entry
Ssol_1170         CDS       T02126                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sol  Sulfolobus solfataricus 98/2
Pathway
sol03030  DNA replication
sol03410  Base excision repair
sol03420  Nucleotide excision repair
sol03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Ssol_1170
   03410 Base excision repair
    Ssol_1170
   03420 Nucleotide excision repair
    Ssol_1170
   03430 Mismatch repair
    Ssol_1170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sol03032]
    Ssol_1170
   03400 DNA repair and recombination proteins [BR:sol03400]
    Ssol_1170
Enzymes [BR:sol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Ssol_1170
    6.5.1.6  DNA ligase (ATP or NAD+)
     Ssol_1170
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Ssol_1170
DNA replication proteins [BR:sol03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Ssol_1170
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Ssol_1170
DNA repair and recombination proteins [BR:sol03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Ssol_1170
   NER (nucleotide excision repair)
    Other NER factors
     Ssol_1170
   MMR (mismatch exicision repair)
    Other MMR factors
     Ssol_1170
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase UvrD-helicase
Motif
Other DBs
NCBI-ProteinID: ACX91408
UniProt: D0KRN9
LinkDB All DBs
Structure
PDB: 

Position
complement(1089391..1091196)
Genome map
AA seq 601 aa AA seqDB search
MEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELG
IGEKFLIKAISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLT
VDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVL
DAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKTLKPQVGIPIRPMLAER
LSNPEEILKKMGGNAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYI
EGKEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDY
TTKPLEARRKLLESIVKPNDYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDA
IYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDSFE
SVCKVASGFSDEQLDELQKKLMEIKRDVKHPRVNSKMEPDIWVEPVYVAEIIGSEITISP
LHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPAVDES
V
NT seq 1806 nt NT seq  +upstreamnt  +downstreamnt
atggagtttaaagttattgccgagtactttgataaattggagaaaatatcttcgaggctt
cagcttacagctttactagctgatcttttaagtaaaagtgacaagacaattatagataaa
gtagtttatattatacaaggcaaattgtggcctgattttttaggttatccagagcttggg
atcggagagaaattcctaataaaagcaatcagtatagccacaaacacggatgaaaattca
gtagaaaatctgtataaaacgataggagatcttggagaggtggctcgaagactaaaaagt
aagcagcaaagtacaggaattttaggatttttgggtaccacaagtaaagagagcttaaca
gtggacgaagtttactctacattatctaaggtagcattaactacgggagagggtagtaga
gatttaaagataagattattagccggcttgttaaaaaaggcagatccattagaggctaag
ttcctagtcagatttgttgaaggtcggcttagagtaggtataggagatgcaacagtttta
gatgctatggcaatagcgtttggtggagggcaatcagcatcggaaataattgaaagagcc
tataatcttagggcagatctaggaaacattgcaaaaattatagtagaaaagggaattgaa
gcgctaaagactctaaagcctcaagttggaataccaattaggccaatgctagctgaaagg
ctatcaaatcctgaagaaatattaaagaaaatgggtgggaatgccatagttgattataaa
tatgatggagagagagcacaaatacacaaaaaagaagataaaattttcatattttctaga
agattagagaacattacttctcagtatccagatgtagttgattatgttagtaaatacata
gaaggtaaagaattcattatagagggagagatagtagctatagatccagaaagtggagag
atgaggccatttcaagagttaatgcacagaaagagaaagtcagatatttatgaagcaatt
aaggagtacccagttaacgtatttctcttcgatctaatgtattatgaagatgtagattat
actacaaagccattagaagctagaagaaaattgctagagagtattgtaaaaccaaatgat
tatgtaaaaatagctcatcatattcaagctaataatgtagaggatcttaaatcgttcttc
tatcgagccatatcggagggcggggagggagtgatggtgaaagcaatcggaaaagatgca
atatatcaagcgggtgctaggggttggttatggataaagcttaaacgtgattatcaaagc
gagatggctgatacagttgacttagtagtggttggcggtttctacggtaagggtaaaaga
ggcggtaagataagctcgttattaatggctgcatataatcctaagactgattcttttgaa
tccgtttgcaaggtagctagtggtttttcagatgaacagcttgatgagttacaaaagaag
ttaatggaaataaagagggacgttaagcatcctagggttaattctaagatggaaccagat
atatgggtagagccagtttatgttgcggagataattggatcagagataacgatatctcct
ttacatacttgttgtcaagacgtagtagagaaggatgctggtttatctataagatttcct
cgatttataagatggagggatgataagagtccagaagatgctacgactactgatgagata
cttgaaatgtacaataagcagcctaagaagaagatcgaatcaccagctgtagatgagagc
gtttaa

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