Shewanella oneidensis: SO_1644
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Entry
SO_1644 CDS
T00099
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
son
Shewanella oneidensis
Pathway
son03030
DNA replication
son03430
Mismatch repair
son03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SO_1644 (dnaE)
03430 Mismatch repair
SO_1644 (dnaE)
03440 Homologous recombination
SO_1644 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
son03032
]
SO_1644 (dnaE)
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_1644 (dnaE)
Enzymes [BR:
son01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SO_1644 (dnaE)
DNA replication proteins [BR:
son03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SO_1644 (dnaE)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SO_1644 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AAN54699
UniProt:
Q8EGG0
LinkDB
All DBs
Position
1726310..1729786
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA
GIKPIIGADFWMQVPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYLRGQVQGRVVIDQEW
LITYNPGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGRYFLELLRTGRPDEER
YLHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTGDMSIEDFLVDCSKKGL
EERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRSPIRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPP
QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLICAGALDALGPHRASMMAT
LPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFAS
ALEIDLEASQLTPSMLDSIEQAISPWRNGAVPVLINYSQAQAKGQFRLAEAWRVNPSDEL
VFALESLLGPHKVRIVFP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatctgcgtgtccacagtgacttttccatgtctgatggt
gtggctaaggtcaagccgatcctcgctcaagttgaagcgaaaggaatggcggcggtggct
ttgacggatcaaaacaacctctgtggtttagtcaagttttacggcggttgccacggtgcg
gggatcaagccgattattggcgcggacttttggatgcaagtgccaggctttgaggatgaa
ttttgtgctgtcaccattatcgcaatggataatgaaggctatcaaaatctcactcaaatc
atcagccaagcctatttacgtggtcaagttcaagggcgtgtagtgattgaccaagagtgg
ttgatcacttacaaccctggcattttgctactgtctggcggcaaagaaggggacataggt
aaagcgctgctaaaaggcaacaatacccaagtcgagtcgttatgcgagttttatcagcag
cattttgaggggcgttatttcctcgaattattgcgtacagggcgccccgatgaggaacgt
tacctgcatatggcggtgggagtagcgcaggaaaagggcattccggtggtagccaccaat
caggtggtgtttttaaagcctgaggactttgaggcacatgaaatccgggtcgcgattcat
gatggttttacgcttgccgatccgcgccgtcctaaaaagtacagtgagcagcagtacctt
cgcagtgaagatgaaatgtgcgaactgtttgccgatattcccgcagcccttgccaatacg
gttgaaattgctaaacgctgtaacgtcaccatccgtttaaacgaatactttttacccaat
tttcctaccggcgacatgtcaattgaagattttctggttgattgctcgaaaaaagggctt
gaagaacgtttagcatttttattccccgatccacaagtgcgcgccgagcgccgcggtgag
tacgatgagcgtctcgatgtggagctcaaggtgattaaccagatgggctttcctggttac
ttcttgatcgtgatggagtttatccagtggggcaaggataatggtattcctgtcggcccg
ggccgtggttcgggcgccggatcacttgtggcctacgctcttaagattaccgacttagac
ccactcgaattcgacctgctgttcgaacgtttcttgaacccagagcgggtgtcgatgccc
gacttcgacgtcgacttctgtatggatagacgcgacgaggtgattgatcacgtggccgaa
ctctacggccgtgaagcggtatcgcaaattatcaccttcggtactatggcggcaaaagcg
gttatccgtgacgtgggccgggtgctcggtcatccctacggctttgtggatcgtatttca
aagcttatcccaccagagcctgggatgacactggccaaagcttttgaagtggagccagca
ctgcaggaatcttacgatgccgatgaggatgtcaaagatcttatcgacatgtgtcgtaaa
cttgagggcgtcacccgaaacgcgggtaaacacgcggggggcgtggtcatcgcgcccacc
aagatcaccgacttttcgccgctatactgcgacgccgaaggtaaaaaccccgtcactcag
tttgataaaaacgatgttgaaaccgcagggttagtgaagttcgacttccttgggcttaga
acgctcaccatcgtcgattgggcgctggaaatgatcaacaaggtggaggtcaaaaatggc
cgttcaccaatacgcattgaagccattccgctagacgatcctgcttcgttccgattactg
caacgttatgaaaccaccgcggtattccagctcgaatcccgcggtatgaaggacttgatt
aaacgcctgcagcccgactgcttcgaagatatgatcgctctggtggcacttttccgccca
gggcctctgcaatcgggcatggtggataactttatcgagcgtaagcatggccgtgaagag
gtgtcttaccccgattcccaataccagcatgaatccttaaaggaactactctcgcccacc
tacggcattattttgtaccaagagcaggtgatgcagattgcacaggtattgtcgggttat
accttaggcggcgccgacatgctgcgccgtgctatgggtaagaaaaaacctgaggagatg
gccaagcagcggagtatttttaaagagggcgcgattaaaaacggtgtcgatggtgagctg
tcgatgaaaatcttcgacctcgtggaaaagttcgccggttacggttttaacaaatctcac
tccgcggcttatgcgttagtttcctatcaaaccctgtggctgaagacccattttccaccg
caatttatggcagcggtgatgtctgccgatatggataacaccgataaaattgtgacctta
gtggatgagtgtgagcggatggggctcaccatcattccgccggatgtgaataagggatta
tttaagtttaccgttgatgatgatctgcggattgtctacggcatcggcgccatcaagggc
gtgggtgaggggccagttgagtcgattttagaggcgcgtaaggacggtccctttacagat
ttattcgacttttgtgcccgtattgatcttaaaaagcttaacaagcgggtgattgaaaag
cttatttgcgccggcgccttagatgcgcttggaccacaccgcgcctcgatgatggcaacc
ttgcctgaggcgataagcgctgccgatcagcacgctaaggccgaggcgattggccagcat
gatatgtttggtctgcttaatagcgatcccgaggacagcaagcagcagtttgttgaatgt
actccgtggccggataaaatttggctcgaaggtgagcgcgaaaccttagggttgtattta
acgggccatcccataaatcaataccttaaagagcttaagcattatacttctgggcggctc
aaggatgtgcatcccactgatcgcggtaaaaccgtgaaggcggcggggttagtggtggcg
acccgcgtgatgctcaccaaacgcggctcgaaaatgggcttgttgaccttagatgacaag
agcgctcggctcgaggtgatgctatttaccgaagcctttgagaagtttaatcacctgctt
gaaaaggaccggatccttatctgcgaaggtgaggtgagtttcgatgattttgccggtggc
aaccggatgacggcgcgcaatattattgatattagtgaggcgcgtagccattttgccagt
gcattggagattgatttagaggcatcgcagttgactccgagtatgctcgatagcatcgag
caggcgataagtccatggcgtaatggcgctgtgccagtactgattaactacagtcaagct
caggccaaggggcagtttagattggctgaagcctggcgagttaacccaagtgatgagttg
gtctttgccttggaaagtttacttggcccccataaagtgcggattgtatttccatag
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