Shewanella oneidensis: SO_2109
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Entry
SO_2109 CDS
T00099
Name
(GenBank) peptidoglycan-binding protein
KO
K21470
L,D-transpeptidase YcbB
Organism
son
Shewanella oneidensis
Brite
KEGG Orthology (KO) [BR:
son00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
son01002
]
SO_2109
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
son01011
]
SO_2109
Peptidases and inhibitors [BR:
son01002
]
Cysteine peptidases
Family C82
SO_2109
Peptidoglycan biosynthesis and degradation proteins [BR:
son01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
SO_2109
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AAN55156
UniProt:
Q8EF77
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All DBs
Position
2208200..2209654
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AA seq
484 aa
AA seq
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MSQRLWWLTALLMAFTLVSIELQAVEPTERPNLSSEPDISIEELLAHTLLLDLADVSPVF
STNYLKLRQWQQRRLNPDEQAELIKMRQQLVRYWHYLDQQAECVEPCISKIFTQQSSYYH
AVSLTLYQLMQLEDLTSWELLTLEEKLSPGQQSPLISPIARRLLILGFLPNELRMEPSVG
VEANNGMLYGDELVTAIKLFQQQHGLLADGVIGKQTLFWLNQSPRARAKLLARNVLRQSI
FTAQLPARYLLVNIPAFELKLIEDGQVALRSKVIVGKASRPTPLLASQISSVVMNPEWRV
PRTIIKRDILPHIRQDGHYLTEREFDVYAYDGQQAEHSADEWQALASSHFPYQLVQRPGP
KNALGRYKFHFDNSFSVYLHGTSEPSLFKRTNRALSSGCIRVEKVEELALWFKTHLVKDQ
RLWDKLHTDTTQSQWFALSDKLPVFVVYWTVWLDDAGQVQYRNDIYQQESELSHAVSATI
FNTL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaagactgtggtggttaacagcattactgatggcatttacattggtttctatc
gaactgcaagcggtggagccaactgagcgacctaatctttcttctgaaccagacatttcg
attgaagaactcctcgctcacacattgttgcttgatcttgccgacgttagccccgtattt
agcactaattatctaaaactcaggcaatggcaacagaggcgcttaaatcccgatgagcaa
gccgaacttataaaaatgcgccaacaacttgtgcgctattggcattacctcgatcaacaa
gcggaatgtgttgaaccttgtattagtaagatatttactcagcaatctagctattaccat
gccgtgagcttgacgctgtatcaactgatgcagttagaagatttgacttcatgggagttg
ttaacactagaggagaaactcagtccagggcagcaaagcccattgatctcgcccatcgct
cggcggctattgatattgggatttctgccaaatgaactccgcatggaaccatcggtaggg
gtagaggcgaataatgggatgctttatggcgatgagctagtcactgccattaagctattc
cagcagcaacacggcttacttgccgatggtgtgataggtaagcaaacccttttctggctt
aaccaatccccgcgagccagagctaagttgctggcgagaaatgtgcttagacagtcgatt
tttacagctcagttacccgcacgttatctactcgtcaatattccagcatttgagctcaaa
ctaattgaagatgggcaggtggctttacgctctaaggttattgtcggtaaagcatcgcgt
ccaacgcccttgttagcaagccaaatttccagtgttgtaatgaaccctgagtggagagtg
ccacgcacgattatcaaacgtgatattttgccgcatattcgccaagatggacattatctc
acggaacgtgaatttgatgtttatgcttatgacggtcaacaagccgagcactctgcagat
gaatggcaagcactagcctcatcacattttccttatcagttggtgcaacggcctggtccc
aaaaatgctttaggccgctataaatttcatttcgacaatagttttagtgtgtatttgcac
ggaacttctgagccaagtctctttaaaagaactaacagagcgttatcatcgggctgtatt
cgggtagagaaggttgaggaattagccctttggtttaagacccatttagtcaaagatcaa
cgcctttgggataaattgcatactgataccactcaatcgcaatggtttgctttgtccgat
aaattgcctgtatttgtggtttattggactgtgtggctcgatgatgcggggcaagtgcaa
tatcgcaatgatatttatcagcaagagagtgagctgagtcatgcggtttctgcaacgatt
tttaacactctctaa
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