KEGG   Shewanella oneidensis: SO_2394Help
Entry
SO_2394           CDS       T00099                                 

Gene name
dacB
Definition
(RefSeq) D-alanyl-D-alanine carboxypeptidase DacB
  KO
K07259  serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Organism
son  Shewanella oneidensis
Pathway
son00550  Peptidoglycan biosynthesis
Brite
KEGG Orthology (KO) [BR:son00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    SO_2394 (dacB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:son01002]
    SO_2394 (dacB)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:son01011]
    SO_2394 (dacB)
Enzymes [BR:son01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     SO_2394 (dacB)
   3.4.21  Serine endopeptidases
    3.4.21.-  
     SO_2394 (dacB)
Peptidases and inhibitors [BR:son01002]
 Serine peptidases
  Family S13: D-Ala-D-Ala peptidase C family
   SO_2394 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:son01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   SO_2394 (dacB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Peptidase_S13 Beta-lactamase2 Peptidase_S11 Transpeptidase
Motif
Other DBs
NCBI-GeneID: 1170111
NCBI-ProteinID: NP_717984
UniProt: Q8EEI8
LinkDB All DBs
Position
2497392..2498915
Genome map
AA seq 507 aa AA seqDB search
METFSRLFTLPRSTGLLLTVVATALFPSNVWAAAADIKHTTLDQQMSDIAPSHSQIALLA
HDMSNDKQLYSQQADTLFIPASTQKVLTAVTALAALGPEFSYVTDLWSDAPIRQGHVEGS
VYLRFSGDPTLTHEDLKALFAQLQKLGIKRIEGHLYLVGDKQEQLQAPGWVWDDLGICFA
APVSSYIINQNCVYGQFVPSSAKQTSRVTLSANSYGVNVSSDAIFSPQANHDFCQLDLVR
LSQNQYHLRGCYPGSEAIPLAIAISDPQKFAIDTLTATLKGKISLSGKVKIGHDIPDKAK
LIASHRSAPLPELLKTMLLKSDNLIADSLFKRVGQDYYKTQGSFTYGAAAMRHILTELGI
DLTNANIVDGSGLSRYNLLSAKQLADVLTLMYQDARFHSLIDSLPEAGVSGTLKYRQGYT
QPPLKNRVFAKTGSMQGVANLAGFIRIPQQRDILFVVLENGISPETKKQRKPAFSADFLT
RLMATVEQQAHTSQTSVKELNTVKKIN
NT seq 1524 nt NT seq  +upstreamnt  +downstreamnt
atggaaacgttttcccgattattcaccttacctcgttcaacgggcttactgctaacggta
gttgcaactgccctattcccaagtaatgtgtgggcagctgccgcagatattaagcatact
acgcttgaccaacaaatgagtgatatagcgccgtctcattcgcaaattgcgttacttgcc
catgatatgtcgaacgacaagcagctttacagccagcaagccgataccttgtttatccct
gccagcacccaaaaagtgcttaccgctgtcacggccttagctgcacttggaccagaattt
agctatgtgacagatctttggagtgatgccccaatccgccagggacatgttgaagggagt
gtatatttacgctttagcggcgatcccacattaacccacgaggatttgaaggctttattc
gctcagctacaaaaactgggcataaagcgaattgaggggcacttatatcttgttggagat
aaacaagaacaattacaagcgcctggctgggtttgggacgatctcggcatttgttttgcg
gcaccagtgtcgagctacatcatcaatcaaaactgtgtatatgggcagtttgtgccaagc
tctgcaaaacaaacgtctcgggtaacattaagcgcgaacagttatggtgttaacgtcagc
agtgatgcaattttttcccctcaagcgaatcatgatttttgccaacttgatttagtccgc
ttaagccaaaatcaatatcatctgcggggctgttatcccggcagtgaagccataccgctc
gcgatcgcgattagcgatccgcaaaaatttgccatcgacaccttaacggccacgctaaaa
ggaaaaatttccctctcgggcaaagttaaaattggccatgatatccctgataaggcaaaa
cttattgccagccatcgcagtgcgccattgcccgagctattaaagacgatgttacttaag
tcggacaacctgatcgctgacagtttgtttaaacgtgtagggcaagactattataaaact
caggggagttttacttatggcgcggcggccatgcgacatattctgactgagttagggatt
gacttaaccaatgccaatatcgtcgatggttctgggctttctcgctataacttgttgagt
gctaagcaattagctgatgtgcttacactcatgtatcaagatgctcgctttcacagcttg
attgatagtttgcccgaggcaggagtcagcggtacgctaaaatatcgacagggttacact
caaccaccactcaaaaaccgtgtttttgccaaaacaggttcaatgcaaggggttgccaat
ttagctggttttattcgaataccacaacagcgggatatcttatttgtggtacttgagaat
ggcataagccctgaaacgaaaaaacaacgcaaacctgcgtttagcgcggactttttaact
cgactaatggccacagttgaacagcaagcacacactagccaaacatctgtcaaagaactt
aacacggttaaaaaaattaactga

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