Shewanella oneidensis: SO_2785
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Entry
SO_2785 CDS
T00099
Symbol
rne
Name
(GenBank) ribonuclease E Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
son
Shewanella oneidensis
Pathway
son03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SO_2785 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
son03019
]
SO_2785 (rne)
03009 Ribosome biogenesis [BR:
son03009
]
SO_2785 (rne)
Enzymes [BR:
son01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SO_2785 (rne)
Messenger RNA biogenesis [BR:
son03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SO_2785 (rne)
Ribosome biogenesis [BR:
son03009
]
Prokaryotic type
rRNA processing factors
SO_2785 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAN55808
UniProt:
Q8EDG6
LinkDB
All DBs
Position
2906075..2909341
Genome browser
AA seq
1088 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPAGMGLIVRTAGVGKESTEL
KWDLKVLQHHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEA
KQHIALVRPDFVERVKLYEAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTP
DYRVIRHRTDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFTAPQKVEQDVAPV
AKVEAAKPGLFSKLFSAIGSFFSSSDNAATEKSAETKKSDSQATNANRRNRRNDTRRTRN
NQDTEKAKEGSREPRARNAKKVADAPQAQERPIREKDESAKRAKPEAKNRSQAPKEVIAD
VQDEAPKQEVVRERRQRRNMRRKVRMDNTTDVVETSIQEEAILAEIVAINADAAVEAQPE
AKAPRSRRQPRKEVAVANETTDTPATDAADEAKPIDAIADAPIVESQADIQVDPKSEAQL
ATTDEDNTDVDDKTKRESRDGQRRSRRSPRHLRAAGQRRRRDEDEQSTAAPAQFIPNDAL
GEDQDYPAPMAIVETVNFADQAVAETVAVEVEVKSVATQPTTVAHTADVTTSYEATFSES
KAIDDATSAVAVEQLTDIKADVVDTEIASEPVVNDNATQTVKVSNVIAESSVVIEPTVQT
TVVAQTDVRTFDAKAEEVTQATEKAELKEVVKSVASAPMAKPAAIVKPQVKPVVAQASAV
QPSEAVVSKPKAASRFGAMVSSEMTKPTVEVRAQVEVPKGREYENTPASEAATKLKHSNS
AESDMARP
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgccctcgttgac
gggcaacaactgtacgacctcgatattgaaagtcctggtcatgagcaaaaaaaatctaat
atttacaagggtaagatcacccgcgtagaaccctctttagaagccgctttcgttgactat
ggtgctgagcgccacggctttttaccacttaaagaaatcgccagagaatatttccctaaa
ggctattctttccaaggtcgcccgaacatcaaagaagtggtcagtgaaggacaagaagtc
attgttcaaattgacaaagaagaacgcggcaacaaaggtgcggcgctgaccacctttatc
agccttgctggctcttatttagtgttaatgccgaacaaccctcgtgcaggcggcatttct
cgccgtatcgaaggggatgagcgcactgaattaaaagaagccatggccgatttagaagtc
cctgctggaatgggccttatcgtccgtactgctggtgtgggtaaagaatcgaccgaacta
aagtgggacttaaaagttctacaacaccattgggctgccatcactgaagcagcgcaaacc
aaaggtgcgcctttcctcattcaccaagaaagtaatgtcattgttcgcgcaattcgtgac
tatttacgccgagatgtgggtgaaattttaatcgaccatccacgtatttacgaagaagcc
aaacaacacattgcccttgtgcgcccagactttgttgagcgagtaaagctctacgaagct
gaagtaccattgtttacgcactaccaaatcgagtcacaaattgaatcagccttccaacgt
gaagtgcgcttgccatcaggcggttcaattgttatcgacccgacagaagccttaacctct
atcgatatcaactctgcccgagccacgaaaggcggtgatattgaagaaactgcattaaat
actaaccttgaagccgccgatgaaattgcccgtcaattacgtctacgtgacttaggtggt
ttagtggttatcgactttattgatatgacaccagttcgtcatcaacgtgaagtcgaaaat
cgtttacgcgatgccgtgcaccacgaccgtgcccgtgtacaattaggccgtatttcacgc
tttggtttaatggaaatgtcacgccagcgtttacgtccgtcattggaagagtccgcagcc
catatctgccctcgttgccatggccaaggcacaatccgtagtactgaatctttagcgctg
tctattctgcgtttgatggaagaagaagccatcaaagaaaacacctcacaaatcgaagcc
attgtacctgtcgatgtggctgcattcctgcttaacgagaaacgtaaagcgattcgtatt
actgaacagcgccacgatgtggaagtctatgtgatcccagatccacatatgatgacccct
gattatcgcgtgatccgtcaccgcaccgatgatgaaatcgacgaatccagctacaagcgt
attgagcagccagaagccaaattgtatgaaccacgtaaactggaacgcactgcggcacct
gcacctgcgctaaaagggtttactgcaccacagaaagtggaacaagatgttgcgcctgta
gccaaagtagaagccgcaaagccaggtttatttagtaaactcttcagtgcaattggttcc
ttctttagctcaagcgataacgctgcaacagaaaaaagcgccgaaaccaaaaagtctgac
agccaggccaccaatgcgaaccgtcgtaaccgtcgtaatgacactcgccgtactcgcaat
aaccaagacactgaaaaagccaaagaaggctcacgcgagccacgtgcgcgcaatgccaag
aaagtggccgatgccccacaagcgcaagagcgcccaatccgtgaaaaggatgaaagtgcg
aagcgcgctaagcctgaggctaagaaccgtagtcaagcaccaaaagaagtgattgcagat
gttcaagacgaagcgccaaagcaagaagtcgtccgtgaacgtcgtcagcgccgcaatatg
cgccgcaaagttcgtatggacaacaccactgatgttgttgaaacgtcaattcaggaagaa
gcaatattagctgaaatcgttgcaatcaatgcagatgctgctgtagaggctcaaccggaa
gctaaagcaccgcgttcacgtcgtcagccacgtaaagaggtcgcggttgccaatgagact
acagacactccagcaacagatgctgctgatgaagcgaagccaattgatgccatcgctgat
gctcctatcgttgaaagccaagctgacatacaagttgatcccaagtcagaggctcaatta
gcaaccactgacgaagacaacaccgacgtggatgacaaaaccaaacgcgaatcccgtgat
ggacaacgtcgtagtcgtagaagccctcgtcatctgagagctgctggccaacgtcgccgc
cgtgatgaagatgagcaaagcaccgcggctccagcgcagttcattccaaatgatgcgtta
ggggaagaccaagactaccctgcaccaatggcaatagttgaaacggttaacttcgcagat
caagctgtggctgaaacagtcgcagtggaagttgaggtgaaaagtgtagcaacgcagcca
acaactgttgcacacacggccgatgtcactacatcctatgaagcaactttctctgaaagt
aaagcgatagatgacgctacgtcagcagttgcagttgaacaactcacggatattaaagcg
gatgttgtcgatactgaaatcgcatctgaacctgtagtcaatgataatgctacacaaacg
gttaaggtatctaacgttatagctgagtcatctgtggtaatagaacccacagtgcaaacc
acagtagtagcgcaaacggacgttagaacctttgatgcaaaagctgaagaagtgacacaa
gcgactgaaaaagctgaactgaaagaagtggtaaaatctgtcgcatcagcaccgatggca
aaacccgcagctatcgtcaaacctcaggttaaacctgtggttgctcaagcttcagcggtt
caaccatcggaagctgttgtgagcaaacccaaagccgctagtcgttttggtgctatggtg
tcatctgaaatgaccaaaccaacagtagaagtcagagcacaggtagaagtgcctaaaggc
cgtgagtacgagaatacccctgcctctgaagcagcgactaagcttaaacacagtaatagt
gcagaatcggatatggctcgaccataa
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