Shewanella oneidensis: SO_3294
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Entry
SO_3294 CDS
T00099
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit XseA
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
son
Shewanella oneidensis
Pathway
son03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SO_3294 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_3294 (xseA)
Enzymes [BR:
son01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
SO_3294 (xseA)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SO_3294 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AAN56292
UniProt:
Q8EC50
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All DBs
Position
3438966..3440303
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AA seq
445 aa
AA seq
DB search
MQVPKNNIYTVSRLNGEVRQILEGQLGKIWLNGEISNFSTPSSGHWYLTLKDHFSQIRCA
MFKGRNQSVSFKPVNGQQVIVKGAISVYEPRGDYQLLIESMLPAGDGLLAQQFEALKMKL
AALGLFAADTKRALPKNIQRIGVITSPTGAAIRDVLHVLARRDPSIEVIIYPTQVQGENA
DINICQAINIANQRLEVDVLLLTRGGGSLEDLWCFNSEALAHTIYNSALPIVSAVGHEVD
TTISDYVADVRAPTPSAGAELLSQDSDNKSQRLATVLARLKQSASHYQLKQERRLSLLEH
RLQRLDPKRTLQQFEQRFDEMQLRLEAALTNKLHGLSRRQQQLASRLEQQSPKHKLALEA
NRLSYLATRLQDAMQDKLSHSGQRIKYVAHQLETVSPLATLSRGYSITTDVNGAVITSAS
QISLGDTITTQLSNERLMSTVTRLP
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtccctaaaaataatatttataccgtctcacgcctcaatggtgaagtcagacaa
attcttgagggacaactgggtaagatctggctaaatggggaaatttccaacttttccacc
cccagttcaggccattggtatttaacccttaaggatcatttttcacaaattcgctgcgct
atgtttaaggggcgcaaccaaagtgttagctttaaacccgtgaatggccagcaggtgatc
gtaaaaggtgcaattagcgtttacgagccgcggggcgactatcaattattaattgaatca
atgcttccggctggagacggcttactggcgcaacaatttgaagcgttgaaaatgaagctc
gccgcgctgggattatttgccgccgatactaaacgcgcactacccaaaaatatccaacgc
attggggttattacctcacccacaggtgccgctattcgcgatgtattacatgtgcttgca
cggcgcgacccatcgattgaagtgattatttacccgacacaagtacagggcgaaaacgcg
gatattaatatctgccaagcaatcaatatcgccaatcaacggcttgaggtggatgtatta
ctgctcacccgcggcggtggctcgttagaagatttatggtgttttaacagcgaagccctc
gcccataccatttataacagtgcgttacccatagtgagtgccgtgggtcatgaagtcgat
accacgatcagtgactatgtggcagatgtacgagctcccaccccctccgctggtgcagaa
ctgctctcacaggacagtgacaataaaagccaacgtttagccacagtgcttgcccgcctc
aaacagagcgcaagccactatcaactcaagcaggagagacgtttaagtttacttgagcac
aggttgcaacgcttagatcctaagcgcaccttgcagcagtttgagcagcgtttcgatgag
atgcaattacggctcgaagccgcgcttaccaacaagctgcatggcttaagccgccgtcag
cagcaactggcaagtcgcctagagcaacaatcgccgaaacataagctcgcgctcgaagct
aatcgtttgagttatttagcgacgcggttgcaggatgccatgcaggacaaactcagccac
agcgggcagcggattaaatatgtagcccatcagttagagactgtcagtccattggcgaca
ttgagccgcggttacagcatcaccactgacgtaaacggtgctgttatcacatctgcaagt
caaatcagtcttggtgatactattacaactcaactgtccaacgagcgtctaatgtctacc
gttactcgtctcccataa
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