KEGG   Solanum tuberosum (potato): 102592093Help
Entry
102592093         CDS       T02981                                 

Definition
(RefSeq) histone deacetylase 5
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
sot  Solanum tuberosum (potato)
Brite
KEGG Orthology (KO) [BR:sot00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatase and associated proteins [BR:sot01009]
    102592093
  09182 Protein families: genetic information processing
   03019 Messenger RNA Biogenesis [BR:sot03019]
    102592093
   04131 Membrane trafficking [BR:sot04131]
    102592093
   03036 Chromosome and associated proteins [BR:sot03036]
    102592093
Enzymes [BR:sot01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102592093
Protein phosphatases and associated proteins [BR:sot01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102592093
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     102592093
Membrane trafficking [BR:sot04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    102592093
Chromosome and associated proteins [BR:sot03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     102592093
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl
Motif
Other DBs
NCBI-GeneID: 102592093
NCBI-ProteinID: XP_006345128
LinkDB All DBs
Position
Un
AA seq 655 aa AA seqDB search
MDSDSFRSSERRRVGLIYDERMKKHFDPIEKDHPESPDRIYEIWNKLQHSEIAQRCTVMG
GKEAKDEHISLVHNRKHIDFIKSISSKQEKFWKEMTMKYNSVYFNQGSSEAAYISAGCVI
EVAEKVAEGELDSAFAIVRPPGHHAEPNQPMGFCLFNNVAIATQYLLDKRADLGIKKILI
IDWDVHHGNGTQKMFWKDPRVLFFSVHRHDFGTFYPCDEAGSHKMIGEGPGKGYNINVPW
EHGGCGDADYLAVWDHVLIPVAKEFCPDIVLISAGFDAAIGDPLGGCCVSPHGYAVMLNK
LLEFAGGKIVMALEGGYNKVSIANSVQACIEVLLQQKPIIGSSEAYPFESTWRVIRAVRE
KLSSFWQSFSERLPVKVTSMSSPYIQVVSSDSEDEYNTFSNRVSQDLEKDIENVIQPFSD
LKVNDGTGITSQASTNSHTWREELSKIDIWYATFGSNMKLSRFLCYIAGGQVEGMRKPCI
GSLDKSKPKEIKWESFPHRLFFAREHTATWGPGGVAFLHPESNSDEKAYLCLYRITLEQF
NDVLLQENTSSFDMNCPLFDMTDLQSIEERKCVPAEAVKNGWYHNVLYLGKENGIPILTM
TCRLSDVDNFKSGKVGMRKPSKEYANTLIRGLVEGKQLSEEKATTYIQEAASRAL
NT seq 1968 nt NT seq  +upstreamnt  +downstreamnt
atggattccgattcttttaggtcgtcggaacgacgacgagttggactgatatacgatgaa
agaatgaaaaagcattttgatccaattgaaaaggatcatccggagagtccagatcgtatt
tatgaaatctggaacaaacttcaacattcagaaatcgctcagagatgtactgttatgggg
ggaaaggaagccaaggatgaacatatatctttggttcataacagaaaacatatagatttc
atcaaaagcattagctcaaagcaagagaagttctggaaagagatgactatgaagtacaat
tcggtatacttcaatcaaggctcttcagaagcagcttacatttctgcaggttgtgtgatt
gaggttgctgagaaagttgctgaaggagaactagactctgcctttgccattgtcaggcct
cccggacatcatgcagaaccaaatcaaccaatgggattttgtttgttcaacaatgttgct
atagctacacaatatctcttggataaaagagctgatttggggattaagaagattttaatt
attgattgggatgtccatcatggaaatggcacccaaaagatgttttggaaggaccctcga
gttctcttcttttctgtgcataggcacgattttggaactttttatccttgtgatgaagct
gggtcacataaaatgattggtgaaggaccgggaaaaggatacaatataaatgttccttgg
gagcatggcggttgtggtgatgcagactatcttgctgtgtgggatcatgtcttgattcct
gttgccaaagaattttgtcctgacattgtcctgatctcagcaggatttgatgcagctatt
ggtgatcctcttggtggatgttgtgttagtccacatggatatgctgtaatgttgaacaag
ttgttggagtttgccggaggcaagattgtaatggcactcgaaggtggatataataaggtc
tctattgcaaattctgtgcaagcttgtattgaagtgttattacagcaaaaaccaattatt
ggatcttcagaggcttatccatttgaatccacatggcgagtgatacgggctgtacgagaa
aagttgagttcattttggcaatcattttcggagagattaccggtgaaagtaactagcatg
agctctccttacattcaggtcgttagctctgattctgaagatgagtacaacaccttttct
aacagggtatcacaagatttggagaaggatattgagaatgtaatacaaccattttcagac
ctgaaagttaatgatggcacaggcataacaagtcaagctagcactaattctcacacttgg
agggaagagctttcaaagattgatatatggtatgccacatttggatcaaatatgaagtta
tcaaggttcctttgctatattgcaggaggacaggtggaaggcatgcgaaagccatgtatt
ggttcgttggataaaagcaagccaaaggagatcaaatgggaatcttttccccatcgtcta
ttctttgctcgtgagcatacagctacatggggtccgggtggggttgcttttcttcaccct
gaaagcaacagtgatgaaaaagcttacttgtgcctatataggataacgcttgagcaattt
aatgatgttttacttcaagagaatacttcgagctttgacatgaattgccctttgtttgac
atgactgacttacagtctattgaagaaagaaaatgtgttccagctgaggctgtcaagaat
ggctggtaccataatgtgctatacctgggaaaggagaatggtattcctattttgacaatg
acatgccgactgtcagatgttgataacttcaaatcaggtaaagtaggtatgcgcaaacca
tctaaagaatatgccaatactctgattagaggtttggtagaagggaagcagctatcagaa
gagaaagccaccacttacatacaagaagcagctagcagagcattgtga

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