KEGG   Saprolegnia parasitica: SPRG_04994Help
Entry
SPRG_04994        CDS       T04137                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
spar  Saprolegnia parasitica
Pathway
spar03030  DNA replication
spar03410  Base excision repair
spar03420  Nucleotide excision repair
spar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SPRG_04994
   03410 Base excision repair
    SPRG_04994
   03420 Nucleotide excision repair
    SPRG_04994
   03430 Mismatch repair
    SPRG_04994
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spar03032]
    SPRG_04994
   03400 DNA repair and recombination proteins [BR:spar03400]
    SPRG_04994
Enzymes [BR:spar01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SPRG_04994
    6.5.1.6  DNA ligase (ATP or NAD+)
     SPRG_04994
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SPRG_04994
DNA replication proteins [BR:spar03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SPRG_04994
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SPRG_04994
DNA repair and recombination proteins [BR:spar03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SPRG_04994
   NER (nucleotide excision repair)
    Other NER factors
     SPRG_04994
   MMR (mismatch excision repair)
    Other MMR factors
     SPRG_04994
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 24127408
NCBI-ProteinID: XP_012198898
UniProt: A0A067CLY3
LinkDB All DBs
Position
Unknown
AA seq 891 aa AA seqDB search
MSKRQQSIMSFFGSKPAGDEPAESPKAKPTPATPEAKQPSTKKPAPKKATPAKEEAAPRK
KKAGEASAAPGLQASLGHIDDDDDDDDDDDPFATKKTPAKKPVVESDDEQEDETMGAHED
EDVAADNVESDDGVKAPEASAPKTATTPKKATTPKKVTTPKKTATTKTATPKRATTPKKE
PTSKEPKPADDTTDKKPADELSSGFFAKKTETPKKESAATPAKATSTATMVQGKEKDPTK
RGGWKAGDAVPYAALARVFALIEETSGRLVIQDTLADFLRSVIELTPSELVPCIYLCVCT
ELAPAYENVQIGIGDAILIKSIGEATGTNAKFVKELYQKEGDLGKVALNARSKQSTLFTF
QKPKLLSVQNVYSDMVKIARMAGNNSQASKCSIIKSLLVRCDKASEEAKYVIRGLQGKLR
IGLAGQSILMALTQAFLHPKEANDKIKQAEALKCVKRAFSEFPNYETLAQALLTIYDREN
GGKGLHAPQFEELAAMCHLTPGVPVSPMLARPTKSYAMVLDRFQDQPFTCEYKYDGERAQ
IHILESGEISIFSRNFENSTERFPDVKLSILKAARKNNVTSCIVDAEVVAVDKTTNQRLP
FQVLSTRSRKNVVLSDIKVQVCIYAFDVIYLNGESLLKEPLRKRREILETMFEIEDGSFE
LATSLNVTNTKEDDMETTVEIVRNFLEEAVKGNCEGLMVKTLEQEATYEPANRSHKWLKL
KKDYLDGIGDSTDLVPVGAFYGKGKRTGVYGAYLLACYDPETEMYQCITKLGTGLSDEVL
QQFYTQFKDKTIDKPRNDYEINDAIKPDVWFEPSTVWEILGADLSISPKYTAAIGHVAKD
KGISLRFPRFIRLREDKRTTQATTAAQIADLYRAQGLNTTNDGDNDDDDLL
NT seq 2676 nt NT seq  +upstreamnt  +downstreamnt
atgagcaagcgccagcagtccatcatgtcgttcttcggctccaagcccgcgggggacgag
ccggccgagtcgcccaaggccaagccgacgccggcaacgcccgaggccaagcagccatca
acgaaaaaaccggcgccaaagaaggcgacgcccgccaaagaagaggcggcgcccaggaag
aaaaaggcgggcgaagcatccgcggcgccgggtctccaagccagcctcggtcacatcgac
gacgatgacgacgacgatgatgacgacgatccgtttgcgactaagaagacgcctgcaaag
aagccggtcgtcgagtcggacgacgagcaagaagacgagacgatgggcgcacacgaggac
gaagatgttgctgctgataacgtcgagtcagatgatggcgtcaaagcgccggaagcctcg
gcgcccaagacggcaacgacaccgaagaaggcaacgactccgaagaaggtgacaaccccc
aagaagactgcaacgaccaagactgcaacgcccaagagggcaacaacacccaagaaggag
cctacgtccaaggagccaaagccggcagacgacacgaccgacaaaaaaccggccgacgag
ctctcgagcggattctttgccaagaagaccgagacgcccaagaaggagtccgcggcaacg
ccagccaaagccacgtcgacggccaccatggtacaaggaaaggaaaaggacccgacgaag
cgcggcggctggaaagctggtgatgccgtcccgtatgctgcgcttgcgcgtgtgtttgct
cttatcgaagaaacctctggccgcctcgtcatccaggacaccttggccgactttcttcgt
agcgtgattgagctcacgccgtccgagctcgtgccgtgcatttacctctgcgtctgcacc
gagctcgcgccggcgtacgagaacgtccaaattggcatcggcgatgcgattctcatcaag
tcgattggcgaagccacgggcacgaacgccaagtttgtcaaagaactctatcagaaggaa
ggcgacctcggcaaggtcgcgctcaacgcccgctccaagcagagcacactctttacgttc
caaaagcccaagctcctctcggtgcagaacgtctactcggacatggtcaagattgcccgc
atggcaggcaacaactcgcaagcgagcaagtgctcgatcatcaagtcgctcctcgtacgc
tgcgacaaggcgtccgaagaggccaagtacgtcattcgcggcctccaaggcaagctgcgc
attggcctcgctggccaatcgatcctcatggccctcacgcaagcctttctccaccccaaa
gaagccaacgacaaaatcaagcaagcggaagcgctcaagtgcgtcaagcgcgcgttctcg
gaatttcccaactacgaaacgctcgcacaagcgctgctgacgatctatgatcgcgagaac
ggcgggaagggcctccacgcaccgcagtttgaggagcttgcagccatgtgccacctaacg
ccgggtgtgcccgtctcgccaatgctcgcgcggccgaccaagtcgtacgccatggtcctc
gatcggttccaggaccagccattcacgtgcgagtacaagtacgacggcgagcgcgcgcag
atccacatcctcgagtcgggcgagattagcatcttctcgcgcaactttgaaaacagtacc
gagcgctttcccgacgtcaagctcagcatcctcaaggcggcgagaaagaacaacgtgacg
agctgcatcgtcgacgccgaggtcgtcgctgtcgacaagacgacgaaccagcgtcttccg
ttccaagtgctcagtacccgctcccgcaagaacgttgtcttgagcgacatcaaagtccaa
gtctgcatttacgcatttgacgtgatttacctcaacggcgaatcgctgctcaaggagccg
ctgcggaagcgccgcgagatcctcgagaccatgtttgagatcgaagatggctcattcgag
ctcgcaacgtcgctcaacgtcaccaacacaaaggaagacgacatggagacgaccgtcgag
atcgtgcgcaacttcctcgaggaagctgtgaaaggcaactgcgagggcctcatggtcaag
accctcgagcaagaagccacatacgagccggcgaaccggtcccacaagtggctgaagctc
aagaaggactatctcgatggcatcggcgactcgaccgacctcgtgcccgtcggcgccttc
tacggcaagggcaaacgcacgggtgtctacggcgcgtacctcctcgcgtgctacgacccc
gagaccgagatgtaccagtgcatcaccaagctcgggacgggtctctcggacgaggtcctc
cagcagttttacacgcagttcaaggacaagacgatcgacaagccgcggaacgactatgag
atcaacgacgcgatcaaacccgacgtgtggttcgagccgagcactgtgtgggagatcctc
ggcgccgacctctcgatctcgcccaagtacacggccgcgatcggccacgtcgccaaggac
aagggcatctcgctgcgcttcccgcgcttcattcggctgcgcgaagacaagagaacgacg
caagccacgacggccgcccagatcgccgacttgtaccgcgcgcagggcctcaacacgacc
aacgacggcgacaacgacgacgacgacctcttgtag

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