KEGG   Saprolegnia parasitica: SPRG_12545
Entry
SPRG_12545        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
spar  Saprolegnia parasitica
Pathway
spar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPRG_12545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_12545
Enzymes [BR:spar01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     SPRG_12545
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPRG_12545
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     SPRG_12545
SSDB
Motif
Pfam: Exo_endo_phos
Other DBs
NCBI-GeneID: 24134493
NCBI-ProteinID: XP_012206681
UniProt: A0A067C0C4
LinkDB
Position
Unknown
AA seq 289 aa
MRRLSIMSYNVLAQCYVRSSFFPYCDSKALRWKNRSQLLKNQFAALPTRPDVICLQECDQ
YEAFWKDTMAAMGYAGMYAQKTSAKQDGVAIFWQPDRLELLHSEQVHLKHAAVNATDADL
ARRLLARDNVGLLGQFRSTVDGALVVVATTHLFWDPKEADVKLAQTEHMLSAIASFTATR
AGSVFLAGDFNSLPDSDVYKLITATYGSAYAAYAADGEPAFTNCNGVTADGSPAFLGTLD
YIFYERPRVDVAALAPLMTLADATCEGALPNRHVGSDHLPLLAEFVFKE
NT seq 870 nt   +upstreamnt  +downstreamnt
atgcggcggctctcgatcatgagctacaacgtcctcgcgcagtgctacgtgcgctcgtcc
ttcttcccgtactgcgacagcaaggcgctgcgctggaagaaccgcagccagctcctcaag
aaccaatttgctgcccttccgacccgacccgacgtcatctgcctccaggagtgcgaccag
tacgaagcgttctggaaagacacgatggcggcgatgggctacgctggcatgtacgcgcaa
aagaccagcgccaagcaagacggcgtcgcgatcttctggcagcccgaccggctcgagctc
ttgcatagcgagcaagtccacctcaagcacgctgctgtcaatgcgaccgacgccgacctc
gcgcgccggctcctcgcacgggacaacgtcgggcttcttgggcagtttcgctccactgtc
gacggcgcgctggttgtggtcgcgacaacccatctcttctgggaccccaaggaggccgac
gtgaagctcgcgcagacggagcacatgctatctgcgatcgcgtccttcaccgccacgcgc
gctggcagtgtcttcttggcaggcgacttcaactcgctgcccgacagcgacgtgtacaag
ctcattacagcgacgtacggcagtgcgtatgcggcgtacgctgccgacggcgagccggcg
ttcaccaactgcaacggtgtcaccgccgacgggtcgccagcgtttctcggaacgctcgac
tacatcttctacgagcggccgagggtcgatgtcgcggccctcgcaccgctcatgacgttg
gccgatgccacgtgcgaaggcgcgttgcccaaccgacatgtgggctccgaccatctcccg
ctgcttgccgagtttgtgttcaaagagtag

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