Saprolegnia parasitica: SPRG_12545
Help
Entry
SPRG_12545 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
spar
Saprolegnia parasitica
Pathway
spar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPRG_12545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spar03019
]
SPRG_12545
Enzymes [BR:
spar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SPRG_12545
Messenger RNA biogenesis [BR:
spar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPRG_12545
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SPRG_12545
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
24134493
NCBI-ProteinID:
XP_012206681
UniProt:
A0A067C0C4
LinkDB
All DBs
Position
Unknown
AA seq
289 aa
AA seq
DB search
MRRLSIMSYNVLAQCYVRSSFFPYCDSKALRWKNRSQLLKNQFAALPTRPDVICLQECDQ
YEAFWKDTMAAMGYAGMYAQKTSAKQDGVAIFWQPDRLELLHSEQVHLKHAAVNATDADL
ARRLLARDNVGLLGQFRSTVDGALVVVATTHLFWDPKEADVKLAQTEHMLSAIASFTATR
AGSVFLAGDFNSLPDSDVYKLITATYGSAYAAYAADGEPAFTNCNGVTADGSPAFLGTLD
YIFYERPRVDVAALAPLMTLADATCEGALPNRHVGSDHLPLLAEFVFKE
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggctctcgatcatgagctacaacgtcctcgcgcagtgctacgtgcgctcgtcc
ttcttcccgtactgcgacagcaaggcgctgcgctggaagaaccgcagccagctcctcaag
aaccaatttgctgcccttccgacccgacccgacgtcatctgcctccaggagtgcgaccag
tacgaagcgttctggaaagacacgatggcggcgatgggctacgctggcatgtacgcgcaa
aagaccagcgccaagcaagacggcgtcgcgatcttctggcagcccgaccggctcgagctc
ttgcatagcgagcaagtccacctcaagcacgctgctgtcaatgcgaccgacgccgacctc
gcgcgccggctcctcgcacgggacaacgtcgggcttcttgggcagtttcgctccactgtc
gacggcgcgctggttgtggtcgcgacaacccatctcttctgggaccccaaggaggccgac
gtgaagctcgcgcagacggagcacatgctatctgcgatcgcgtccttcaccgccacgcgc
gctggcagtgtcttcttggcaggcgacttcaactcgctgcccgacagcgacgtgtacaag
ctcattacagcgacgtacggcagtgcgtatgcggcgtacgctgccgacggcgagccggcg
ttcaccaactgcaacggtgtcaccgccgacgggtcgccagcgtttctcggaacgctcgac
tacatcttctacgagcggccgagggtcgatgtcgcggccctcgcaccgctcatgacgttg
gccgatgccacgtgcgaaggcgcgttgcccaaccgacatgtgggctccgaccatctcccg
ctgcttgccgagtttgtgttcaaagagtag
DBGET
integrated database retrieval system