KEGG   Streptomyces parvulus: Spa2297_01950Help
Entry
Spa2297_01950     CDS       T04685                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spav  Streptomyces parvulus
Pathway
spav03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Spa2297_01950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spav03400]
    Spa2297_01950
Enzymes [BR:spav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Spa2297_01950
DNA repair and recombination proteins [BR:spav03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Spa2297_01950
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ANJ05852
UniProt: A0A191UT33
LinkDB All DBs
Position
431050..432030
Genome map
AA seq 326 aa AA seqDB search
MELPQIPPMLATPGTLPPAALDARWAYETKQDGQRVVAYLPGDGSVLLRARSGHDITGAY
PELAALGDALGTTPAVLDGEVLALDQQGRADFQLLQSRMGLAHAPARAAQRASKVPVHLV
LFDALHLAGRSLLRLPYTGRRELLTDLGLAGPSWSTPAALVGHGAQALRATREHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMRSEDVVVGGWLPGKGHITGLPGALLVGQRAGGRLRYV
GGVGTGWSAAERAELAALLKAAASDACPFDPVPAVPGARWVVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEDSAADIPDDRG
NT seq 981 nt NT seq  +upstreamnt  +downstreamnt
gtggagctgccgcagatcccgccgatgctcgccaccccgggcaccctgccgcccgccgcg
ctggacgcacgctgggcctacgagaccaagcaggacggccagcgggtggtggcctacctg
cccggcgacggaagcgtgctgctgcgcgcccgctccggccacgacatcaccggcgcctac
cccgaactggcggcgctcggcgacgcgctcggcaccacccccgccgtgttggacggcgag
gtgctggccctggaccaacagggccgcgccgacttccagttgctccagtcccggatgggc
ctcgcgcacgccccggcccgcgccgcgcaacgggcgtcgaaggtccccgtccacctggtg
ctcttcgacgccctgcacctggcgggccggtccctgctgcgcctgccctacaccggccgc
cgcgagctgctcacggacctgggcctggccggcccgtcctggtccacccccgccgcgctg
gtcggccacggcgcccaggccctgcgggccacccgcgagcacggcctggaggggctggtg
tgcaagcggctggactcggtgtacgaacccggggtccgctcccgcgcctggatcaagatc
cgcaacatgcgcagcgaggacgtcgtggtcggcggctggctgcccggcaaggggcacatc
accggcctgcccggcgccctcctggtcggccagcgcgccggggggcggctgcgctacgtc
ggcggcgtcggcaccggctggagcgcggccgagcgcgccgaactggcggcgctgctgaag
gcggcggcgtccgacgcgtgccccttcgacccggtgccggccgtgccgggcgcccgctgg
gtggtcccccggctggtcggcgaggtccgctacagcacccgcacccgcgagggcatgctg
cgccagccgtcctggctaaggctccgtccggacctggcacccgaggactcggcggccgac
attccggacgaccgaggatga

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