Solanum pennellii: 107005036 Help Entry 107005036         CDS       T04130                                  Definition (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism spen  Solanum pennellii Pathway spen03030   DNA replication spen03410   Base excision repair spen03420   Nucleotide excision repair spen03430   Mismatch repair Brite KEGG Orthology (KO) [BR:spen00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     107005036    03410 Base excision repair     107005036    03420 Nucleotide excision repair     107005036    03430 Mismatch repair     107005036  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:spen03032]     107005036    03400 DNA repair and recombination proteins [BR:spen03400]     107005036 Enzymes [BR:spen01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      107005036     6.5.1.6  DNA ligase (ATP or NAD+)      107005036     6.5.1.7  DNA ligase (ATP, ADP or GTP)      107005036 DNA replication proteins [BR:spen03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     107005036  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      107005036 DNA repair and recombination proteins [BR:spen03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      107005036    NER (nucleotide excision repair)     Other NER factors      107005036    MMR (mismatch excision repair)     Other MMR factors      107005036 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  107005036 NCBI-ProteinID:  XP_015058981 LinkDB All DBs Position 11 AA seq 801 aa AA seqDB search MLCLSSYRFTQTTLLYNFSVKPSSIFLHFYKKKQSTLKPLFFSVNPNSNSRTMSDSPPAP PRSAFAVLMANSKKKTTSSPKKRKTPDVETSSKSPVVNQDSVLKPIKDTHLVNESKSEEL EVKKQSQDSTLKPIEDTHLVNESKSEECVVKKRKMISPDESIVEIKKKAANFDPRKAVYW GDGQRVPFMFVVKAFDAISKESGRIVITEIVTNMLRTVIETTPEDLLPVVYLAANKIAAA HDGMELGIGDASIIKALAEACGAKEAHIKKQYKELGDLGLVAKASRSSQPLMHKPEALTV AKVFDTFRIIAKESGKDSQEKKKNYIKSLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLV AIAHAFVYSDKHSSPPAGVDSPLEEAAKIVKQVYSVIPVYEKIIPALLADGVWKLSETCG FSPGVPVGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAER NTGKFPDVVTAISRLKKSSATSFVLDCELVAYDREKQKILPFQVLTTRARKNVVISEIKV NVCIYAFDILYLNGQPLLQEQLNVRREHLYKSFEEEPGYFQFATAVTSNDLEEITKFLED AVNGSCEGLIIKTLTKDATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTG VYGAFLLACYDSNNEEFQSICKIGTGFSELQLEERSSSLRSKVIPKPKSYYRYGETINPD VWFEPTEVWEVKAADLTISPVHRAAQGIVDPAKGISLRFPRLSRVREDKKPEEASSAEMV ADMYNAQKHNQKNNQDDNDED NT seq 2406 nt NT seq  +upstreamnt  +downstreamnt atgttgtgtttgagttcatatcgtttcactcaaactactcttctttacaatttctccgtt aaaccttcttcaatctttcttcatttctacaagaagaagcagtcaactctcaaacccctt ttcttctctgtaaaccctaattcaaattcaagaaccatgtctgattctcctcctgctcct cctcgctctgcgtttgcagtacttatggcaaattccaagaagaaaacaacctcctcacct aagaaacgtaaaaccccagatgttgaaacttcaagtaaaagccctgttgttaatcaagat tcagttttgaagccaattaaggacacccatttggtcaatgagtcgaaaagtgaggagttg gaggtgaagaaacagagtcaagactcaactttgaagccaattgaggacacccatttggtt aatgagtcgaaaagtgaggagtgtgtggtgaagaaacggaaaatgattagtccagatgag agcattgtggaaataaagaaaaaagctgcgaactttgatccaagaaaggctgtgtattgg ggagatggtcagagagtgccgttcatgtttgtagttaaggcgtttgatgcaatttcgaag gagtcagggcggattgtgatcactgaaattgtgactaatatgttgaggactgtgattgag acgacgcctgaggatttgttgcctgttgtgtaccttgctgctaataagattgcagctgca cacgatgggatggagcttggtattggtgatgcttccattatcaaggcacttgctgaagcc tgtggtgctaaagaagcacatatcaagaagcaatacaaggagcttggagatttgggcctt gttgcaaaagcaagtcgttcatcacagcctctgatgcataaaccagaagcactgactgtt gccaaagtttttgacacatttcggatcattgccaaggaatctggaaaggatagtcaggaa aagaaaaagaattacattaaatcactgcttgttgcagccactgattgtgaaccccaatat ttgattcgtcttctccagacaaagctacgcattggtttggctgaacaaacactgttagtc gcaatcgctcatgcttttgtgtactcagataagcattcatcacctcctgcaggtgtagat tctcctttggaagaggctgccaagattgttaagcaagtgtactctgtgattccagtttat gaaaaaattatccctgctcttctagctgatggtgtttggaagctttcagaaacatgcggt ttctcacctggtgttcctgttggacctatgctagctaagccaaccaaaggagtatctgaa attcttgataagtttcaggatatggagttcacatgtgaatacaagtatgatggtgaacgt gcccagatacactacatggaagatggttccgttgagatatacagccgaaatgcagaaaga aatactggaaagtttcctgatgttgttactgctatctcaagattgaagaaatcatctgca acttcatttgttcttgactgtgaactggttgcatacgaccgtgagaaacagaagatcctg ccctttcaggtccttactacacgtgctcgtaaaaatgttgtcattagtgaaatcaaggtc aacgtgtgcatatatgcttttgatatcttgtatcttaatggacaaccacttcttcaagag caacttaatgttcgcagagagcatctttacaagtcatttgaagaagaacctggatatttc cagtttgctacagctgtaacctcaaatgatctcgaggaaataacaaaatttcttgaagat gcggtcaacggcagttgtgagggattgattatcaaaacactaactaaagatgctacatat gagccttcaaaacggtcaaataactggctaaaactgaagaaggactacatggagagtatt ggcgactcactggatctggtaccaattggtgcttttcatggtcgggggaaacgtactggt gtttacggagcctttctcctagcttgttatgatagcaacaacgaggagtttcagagcatc tgtaaaatcggaactgggttttctgaactacagcttgaggaacgctcttccagccttcgt tctaaagttattcctaaaccaaagtcatattacaggtatggggaaaccatcaatccagat gtttggtttgaacctaccgaggtctgggaagtgaaagctgctgatcttactatcagccct gtccaccgtgctgcccaaggtatcgtggatcccgcgaagggaatttcgttacgatttcca cgtctgagccgtgtacgagaagacaagaagcctgaggaggcctcatcagcagagatggta gcggatatgtataacgctcagaaacacaatcaaaaaaacaatcaggatgacaacgatgaa gactaa

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