Solanum pennellii: 107005036
Entry
107005036 CDS
T04130
Definition
(RefSeq) DNA ligase 1-like
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
spen
Solanum pennellii
Pathway
spen03030
DNA replication
spen03410
Base excision repair
spen03420
Nucleotide excision repair
spen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107005036
03410 Base excision repair
107005036
03420 Nucleotide excision repair
107005036
03430 Mismatch repair
107005036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spen03032
]
107005036
03400 DNA repair and recombination proteins [BR:
spen03400
]
107005036
Enzymes [BR:
spen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107005036
6.5.1.6 DNA ligase (ATP or NAD+)
107005036
6.5.1.7 DNA ligase (ATP, ADP or GTP)
107005036
DNA replication proteins [BR:
spen03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
107005036
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
107005036
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
107005036
NER (nucleotide excision repair)
Other NER factors
107005036
MMR (mismatch excision repair)
Other MMR factors
107005036
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Other DBs
NCBI-GeneID:
107005036
NCBI-ProteinID:
XP_015058981
LinkDB
Position
11
AA seq
801 aa
MLCLSSYRFTQTTLLYNFSVKPSSIFLHFYKKKQSTLKPLFFSVNPNSNSRTMSDSPPAP
PRSAFAVLMANSKKKTTSSPKKRKTPDVETSSKSPVVNQDSVLKPIKDTHLVNESKSEEL
EVKKQSQDSTLKPIEDTHLVNESKSEECVVKKRKMISPDESIVEIKKKAANFDPRKAVYW
GDGQRVPFMFVVKAFDAISKESGRIVITEIVTNMLRTVIETTPEDLLPVVYLAANKIAAA
HDGMELGIGDASIIKALAEACGAKEAHIKKQYKELGDLGLVAKASRSSQPLMHKPEALTV
AKVFDTFRIIAKESGKDSQEKKKNYIKSLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLV
AIAHAFVYSDKHSSPPAGVDSPLEEAAKIVKQVYSVIPVYEKIIPALLADGVWKLSETCG
FSPGVPVGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAER
NTGKFPDVVTAISRLKKSSATSFVLDCELVAYDREKQKILPFQVLTTRARKNVVISEIKV
NVCIYAFDILYLNGQPLLQEQLNVRREHLYKSFEEEPGYFQFATAVTSNDLEEITKFLED
AVNGSCEGLIIKTLTKDATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTG
VYGAFLLACYDSNNEEFQSICKIGTGFSELQLEERSSSLRSKVIPKPKSYYRYGETINPD
VWFEPTEVWEVKAADLTISPVHRAAQGIVDPAKGISLRFPRLSRVREDKKPEEASSAEMV
ADMYNAQKHNQKNNQDDNDED
NT seq
2406 nt
+upstream
nt +downstream
nt
atgttgtgtttgagttcatatcgtttcactcaaactactcttctttacaatttctccgtt
aaaccttcttcaatctttcttcatttctacaagaagaagcagtcaactctcaaacccctt
ttcttctctgtaaaccctaattcaaattcaagaaccatgtctgattctcctcctgctcct
cctcgctctgcgtttgcagtacttatggcaaattccaagaagaaaacaacctcctcacct
aagaaacgtaaaaccccagatgttgaaacttcaagtaaaagccctgttgttaatcaagat
tcagttttgaagccaattaaggacacccatttggtcaatgagtcgaaaagtgaggagttg
gaggtgaagaaacagagtcaagactcaactttgaagccaattgaggacacccatttggtt
aatgagtcgaaaagtgaggagtgtgtggtgaagaaacggaaaatgattagtccagatgag
agcattgtggaaataaagaaaaaagctgcgaactttgatccaagaaaggctgtgtattgg
ggagatggtcagagagtgccgttcatgtttgtagttaaggcgtttgatgcaatttcgaag
gagtcagggcggattgtgatcactgaaattgtgactaatatgttgaggactgtgattgag
acgacgcctgaggatttgttgcctgttgtgtaccttgctgctaataagattgcagctgca
cacgatgggatggagcttggtattggtgatgcttccattatcaaggcacttgctgaagcc
tgtggtgctaaagaagcacatatcaagaagcaatacaaggagcttggagatttgggcctt
gttgcaaaagcaagtcgttcatcacagcctctgatgcataaaccagaagcactgactgtt
gccaaagtttttgacacatttcggatcattgccaaggaatctggaaaggatagtcaggaa
aagaaaaagaattacattaaatcactgcttgttgcagccactgattgtgaaccccaatat
ttgattcgtcttctccagacaaagctacgcattggtttggctgaacaaacactgttagtc
gcaatcgctcatgcttttgtgtactcagataagcattcatcacctcctgcaggtgtagat
tctcctttggaagaggctgccaagattgttaagcaagtgtactctgtgattccagtttat
gaaaaaattatccctgctcttctagctgatggtgtttggaagctttcagaaacatgcggt
ttctcacctggtgttcctgttggacctatgctagctaagccaaccaaaggagtatctgaa
attcttgataagtttcaggatatggagttcacatgtgaatacaagtatgatggtgaacgt
gcccagatacactacatggaagatggttccgttgagatatacagccgaaatgcagaaaga
aatactggaaagtttcctgatgttgttactgctatctcaagattgaagaaatcatctgca
acttcatttgttcttgactgtgaactggttgcatacgaccgtgagaaacagaagatcctg
ccctttcaggtccttactacacgtgctcgtaaaaatgttgtcattagtgaaatcaaggtc
aacgtgtgcatatatgcttttgatatcttgtatcttaatggacaaccacttcttcaagag
caacttaatgttcgcagagagcatctttacaagtcatttgaagaagaacctggatatttc
cagtttgctacagctgtaacctcaaatgatctcgaggaaataacaaaatttcttgaagat
gcggtcaacggcagttgtgagggattgattatcaaaacactaactaaagatgctacatat
gagccttcaaaacggtcaaataactggctaaaactgaagaaggactacatggagagtatt
ggcgactcactggatctggtaccaattggtgcttttcatggtcgggggaaacgtactggt
gtttacggagcctttctcctagcttgttatgatagcaacaacgaggagtttcagagcatc
tgtaaaatcggaactgggttttctgaactacagcttgaggaacgctcttccagccttcgt
tctaaagttattcctaaaccaaagtcatattacaggtatggggaaaccatcaatccagat
gtttggtttgaacctaccgaggtctgggaagtgaaagctgctgatcttactatcagccct
gtccaccgtgctgcccaaggtatcgtggatcccgcgaagggaatttcgttacgatttcca
cgtctgagccgtgtacgagaagacaagaagcctgaggaggcctcatcagcagagatggta
gcggatatgtataacgctcagaaacacaatcaaaaaaacaatcaggatgacaacgatgaa
gactaa
DBGET
integrated database retrieval system
