Solanum pennellii: 107011483
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Entry
107011483 CDS
T04130
Name
(RefSeq) ubiquitin receptor RAD23d isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
spen
Solanum pennellii
Pathway
spen03420
Nucleotide excision repair
spen04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107011483
09124 Replication and repair
03420 Nucleotide excision repair
107011483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
spen03051
]
107011483
03400 DNA repair and recombination proteins [BR:
spen03400
]
107011483
Proteasome [BR:
spen03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
107011483
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
107011483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
Rad60-SLD_2
Dsc3_N
TECR_N
Ubiquitin_4
CUE
UBA_3
Crinkler
Motif
Other DBs
NCBI-GeneID:
107011483
NCBI-ProteinID:
XP_015066492
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Position
2:complement(38025424..38031818)
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AA seq
383 aa
AA seq
DB search
MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETAQGQDVYPAAQQMLIHQGKVLKDPTTLE
ENKVAENSFVVIMLSKNKVSASGTSATQPAPSNSAQPATTGQPTQTVAPQATAASVAPAQ
SAPAPTPAPAAAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSWERDTV
VRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPASGQAVNPPVQASQPAVPSSGPNANPL
DLFPQGLPNVGSNAAAGNLDFLSNSPQFQALRAMVQANPQILQPMLQELGKQNPQLMRLI
QEHQADFLRLINEPVEGEGNVPGQPAGAIPQAVTVTPEEREAIERLEAMGFDRALVLQVY
FACNKNEEMAANYLLDHMHEFDE
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgaagatttttgtgaagactttgaaaggcacgcacttcgagatcgaagtgaaacccgaa
gacacggttgctgacgtgaagaaaagcatagaaacagctcaaggtcaagatgtctacccc
gctgctcaacagatgcttatccaccagggtaaagttctcaaggaccccacaacattggag
gaaaacaaagttgctgaaaatagttttgtcgtcataatgctttccaagaataaggtttca
gcaagtggaacctcagctacacagcctgcaccttcaaattcggcccagcctgcaaccaca
ggccaacctacacagacagtagcacctcaagcaactgctgcaagtgtggcacctgcacaa
tctgctcctgctccaactcctgctcctgctgcagctccagctccagctccagctgccgct
aatcccctgacagacgtgtatggtcaagcggcatcaaaccttgttgctggaagtaccttg
gaaactacggttcaacagattcttgatatgggtggtggaagttgggaacgggatacggtt
gtgcgtgctctacgggctgcatataacaatccagagagagctattgaatacctgtactct
ggtattcctgagcaagcagaaatcccacctgctgctcctgctagcggacaggctgtaaat
ccccctgttcaggcttcacagccagctgttccgtccagtgggccaaatgctaatcctttg
gatctctttcctcagggccttccaaatgtgggttcaaatgctgcagctggaaatttggat
ttcttaagcaatagtccacagtttcaagccctccgagcaatggtgcaagcaaacccacag
atattgcagccaatgctccaggagttgggtaagcaaaatcctcaactgatgcggctgatt
caagagcatcaagctgacttcttgcgcctcatcaatgaacccgttgagggggaagggaat
gtgcctgggcagccggcaggggctataccacaagctgtgactgtcacacctgaagagcgt
gaggctattgagcgacttgaagctatgggtttcgatcgagctttggtgttgcaagtatat
tttgcatgcaacaaaaatgaggagatggctgcaaactatctgttggatcacatgcatgag
tttgatgaatga
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