KEGG   Sphingomonas sp. YZ-8: D3Y57_14880Help
Entry
D3Y57_14880       CDS       T05706                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spha  Sphingomonas sp. YZ-8
Pathway
spha03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    D3Y57_14880 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spha03400]
    D3Y57_14880 (ligD)
Enzymes [BR:spha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     D3Y57_14880 (ligD)
DNA repair and recombination proteins [BR:spha03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     D3Y57_14880 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AYJ86989
LinkDB All DBs
Position
complement(1922554..1925019)
Genome map
AA seq 821 aa AA seqDB search
MARAPAKPKPLPTSEAALTLYREKRDFRKTPEPSGGAPSPTDNHFIVQKHAASRLHYDFR
LEMDGVLWSWAVTRGPSLNPDDKRLAVRTEDHPLDYATFEGTIPKDEYGGGTVMLWDDGT
WESLPGKDPRKTIVEGHLHFFLHGHRMKGEWLLIRLKPRGKEKSENWLLRKIADEHAGGS
DDLVTRELTSVKTGRSMEEIADGKAVSAPKAATKQPKPTKNGQKSPPFRAVQLATLVDTV
PSGDRWVHEMKYDGYRTLISVGGNAGKAYTRSGLDWTDRFQGIVDDAATLASSALFDGEA
VVLDAEGKTSFQGLQAALKGDRSAIIYYAFDLLELDGEDLTKLPLLERKAKLAALIGNGT
DRIRYSDHIVGKGEQLFSSFCKAGLEGVISKRADSPYSGTRSSNWLKTKCIKRQEFIIVG
WTPSEKTRGFRSLLLGINDKDGLRYAGKAGTGFSSDEMDRLLKLMEPLEVKSPTVEAPRA
AVRGAHWVRPKLVAEIAFTEFTGEGVMRHPSYIGLREDKNAEAVVLEKPVAAVKKSTVKI
TNPDRMIFPESGQTKGQLAAYYQAVAEIMLPWAGNRPISLVRCPQGRGKKCFFQKHDAGV
FGESVKQIAITEKDGHQEPYIFVDSADGLLTCVQMGTIEFHGWGARIEDIEKADRLVFDL
DPDEGLNFKDVISAAFHVRDLLAEMGLATFPMVTGGKGVHIIAPLTPQAEWPAVKDFAHR
FASALAQSQPDRFTAALAKAKRTGRIFVDYLRNQRGSTAVMPYSARSRPNAPVAAPIIWE
ELRKLDGAARWHIEDAAELIERSRSKNLAGWGRANQTLPDL
NT seq 2466 nt NT seq  +upstreamnt  +downstreamnt
atggcccgcgccccagccaaacccaaaccgcttccaacttccgaagccgcactcactctc
taccgcgaaaaacgcgacttcaggaaaacccccgaaccttcaggcggcgcgccctccccc
accgacaatcacttcatcgttcagaaacacgccgcatcccgcctccattacgatttccga
ctggaaatggacggcgtactctggagctgggccgtcacgcgcgggccaagcctcaacccc
gacgacaagcgcctcgccgtccgcaccgaagaccatccgctcgactatgcgacgttcgag
ggcacgatcccaaaggacgaatacggcggcggcaccgtcatgctgtgggacgacggcaca
tgggaatcgctgcccggcaaagacccgcgcaagaccatcgtcgagggtcacctacacttc
ttcctccacggccaccgcatgaaaggcgaatggctgttgatccgcctgaaaccgcgcgga
aaggaaaagagtgagaactggctgttgcgtaaaatcgccgacgagcacgcgggcggatcg
gacgacctcgtgacgcgcgagcttaccagtgtgaaaaccgggcgctcgatggaggaaata
gccgacggaaaggccgtttctgcgccgaaagccgccacgaaacagccaaaaccaaccaaa
aacgggcaaaaatcacccccgtttcgcgctgttcaacttgcaactctggtggataccgta
ccctcgggcgaccgctgggtccacgagatgaagtacgacggctatcgcaccctgatctcg
gtcggtggaaacgccggcaaagcctatacccgctccggcctcgactggaccgaccgcttt
cagggcatagtcgatgacgccgcgacactggccagctctgccctgttcgatggcgaggca
gtcgttctggacgccgaaggaaaaaccagttttcaaggacttcaggccgcgttgaagggc
gaccgctcagcaataatctattacgcgttcgacctgctggaattggacggcgaggatctg
accaaactccccctccttgaacgcaaagcgaaactggccgcgctgatcggcaacggcacc
gaccgcatccgctattccgaccatatcgtcggcaagggcgaacaactattcagcagtttc
tgcaaggccggtctggagggcgtaatctccaaacgcgcagactccccctattccggcacc
cgatcatccaactggttgaaaacaaagtgtatcaagcggcaggagttcatcattgtcgga
tggacgccctcggaaaaaaccagaggattccggtctctgttgttgggcataaatgacaag
gacggcctccgctatgcaggcaaggcaggcaccggtttctcgtctgacgagatggaccgc
ctcctgaaactgatggagcccctcgaagtaaagtccccgacagtcgaagccccacgcgcc
gccgttcgcggggcacattgggtaaggccaaagctcgtcgccgagatagcctttacagaa
tttaccggagaaggcgtgatgcgccaccccagctatatcggcctgcgcgaagacaaaaac
gctgaggcggtggtgctggaaaaaccagtcgcggccgtgaaaaaatccacagtgaaaatc
accaatcccgaccgcatgatcttcccggagtccggccagaccaaaggccaactcgccgcc
tattatcaggcggtggcagagataatgctcccctgggccgggaaccgcccgatcagcctc
gtccgctgtccccaggggcgcggcaagaaatgctttttccagaaacacgatgccggggtg
ttcggtgagagcgttaagcaaatcgccatcaccgaaaaggacggccatcaggaaccctac
atcttcgtcgacagtgccgacggcctgctgacctgcgtccagatgggaacgatcgaattt
cacggctggggcgcgcggatagaagatatcgaaaaggccgaccgcctggtctttgatcta
gacccggacgaagggctgaactttaaggacgtcatctccgccgccttccacgtccgtgat
ttgctggcggaaatggggctggcgaccttcccgatggtgaccggcggcaaaggtgttcac
atcatcgcgcccctgaccccgcaagccgaatggcctgcggtaaaggacttcgcccaccgt
ttcgccagcgcactggcacagtctcaacccgatcgatttaccgccgcgctggcaaaggcg
aaacgcacgggccgcatctttgtggactacctccgcaaccagcgcggttcgacggctgtg
atgccttacagtgcgcgctcacggcccaatgcgccggttgcggccccgatcatctgggag
gagcttcgcaagctggacggggctgcgcgctggcatatcgaagatgccgccgaattgatc
gaacggtccagatccaaaaaccttgcgggctggggtcgggcaaaccagacgctgcccgac
ctttaa

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