KEGG   Sphingobium sp. EP60837: EP837_02332Help
Entry
EP837_02332       CDS       T04432                                 

Definition
(GenBank) DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphb  Sphingobium sp. EP60837
Pathway
sphb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EP837_02332
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphb03400]
    EP837_02332
Enzymes [BR:sphb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EP837_02332
DNA repair and recombination proteins [BR:sphb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EP837_02332
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ANI78733
UniProt: A0A173L0C7
LinkDB All DBs
Position
1:2379103..2381595
Genome map
AA seq 830 aa AA seqDB search
MAEADPLKEYNRKRDFTRTKEPAGKQGHTSGNSFIVQKHDASRLHYDFRLELDGVLKSWA
VTRGPSLDPADKRLAVRTEDHPLSYASFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSAKD
LPEGHLHFILHGQRMKGEWLLIRLKPRPGEGKRENWLLRKIDDAHAGPAEDLVGRELTSI
KTGRTMGEIAANAPAISLKGKRGKAFDAAMAEAEQAAPARAKPKRRTGKPPPFQAPQLAT
LVDAVPTGSQWLHEIKYDGYRTLLSVAGDRVQVFTRTGLDWTERFASLAKEVAGMGLPST
LIDGEIVALGPDGNPDFSTLQQVLKGEAKGALHLFAFDLLSLDGEDLTWLPNIARKEKLA
ALLGQGSAHVHFSDHIVGAGEKLFRTMCDAGQEGIICKRADAPYRGARTKNWLKVKCTRR
QEFVIVGWTPSSASGRSLRNILLAQNGENGLVYAGKVGTGFNARNSDGLLRQLKARTRKS
PALTVPRAEARGAQWVRPDVVAEIAFVEFTSDNVVRHGSFLGLREDKQAGEVTREQVMTT
PPSESDVHVSNRDRLIFPEAKVTKGQLADYYEAAGAIMLPWIAHRPISLVRCPQGRAKKC
FFQKHDSGSFGDHVKHVPIREKDGDEQDYLYVDDIDGLVACVQMGTIEFHGWGSRVEDVE
KPDRLIFDLDPDEGLDFEDVKKAARDIRRTLEDIGLISFPMLSGGKGVHVVVPLTPEAEW
PAVKDFADRFARALAAAEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARENA
PVAAPVTWDELDDIERAGSYTIADVDQLVERAGSRQLRGWGEARQTLPDY
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atggccgaagccgatcctctgaaggaatataatcgcaaacgcgatttcacccggaccaag
gagccggcgggcaaacagggccataccagcgggaacagcttcatagtccagaagcatgat
gcctcgcggctgcattatgacttccggctcgaactggatggcgtactcaagagctgggca
gtgacgcgcgggccgagcctggatcctgccgacaagcggctggcggtgcggaccgaagat
catccgctgtcatacgccagtttcgaagggacgatcccgaagggagaatatggcgggggc
accgtgatgctttgggatgagggaacatgggagcctgttccgggtaagagcgccaaggac
ctgccggaaggacatctgcatttcattcttcacgggcagcggatgaagggcgaatggctc
ctcatccggctgaaaccccgccccggcgaagggaagcgggagaactggctgcttcggaag
atcgacgacgcccatgccgggccggccgaagatttggtcgggcgagaactgaccagcatc
aagactggccgaacgatgggtgagatcgccgccaacgcacccgccatttcgctgaagggc
aagagaggcaaggcgttcgatgccgccatggcggaggctgaacaggctgcgcccgcgcgt
gccaagcccaagcggcggaccggcaagccgccgccattccaggcgccgcagctcgccaca
ctcgtcgacgcggtgccgaccggcagccaatggctgcacgagataaagtatgacggctat
cgcactctgttgagcgtggcgggagatcgcgtacaggtgttcacgcggaccggcctcgat
tggaccgagcggttcgcttcgctcgcgaaagaagtggcgggcatgggtttgccctcgacc
ttgatcgatggggagatcgtcgcgctgggacctgacggaaaccctgatttttccacattg
cagcaggtcttgaagggtgaggcaaagggcgcgctccacctttttgcctttgaccttctg
tccctggatggggaggacctgacatggcttcccaacatcgcgcgcaaggaaaagcttgca
gccttgctcgggcaggggagcgcccatgtgcatttttcggaccatatcgtcggcgctggg
gagaaactgttccgcaccatgtgcgatgccggccaggaaggcatcatctgcaaacgcgcg
gacgctccctatcgcggcgcgcggacgaagaactggctgaaggtcaaatgtacccgccgc
caggagttcgtcatcgtcggatggacgccaagctccgcaagcgggcggtcgcttcgcaac
attctgcttgcccagaacggcgagaatggcctcgtctatgctgggaaggtcgggaccggc
ttcaacgcgcgcaacagcgacggtttgctccgccagttgaaagctcgaacccgcaaatcg
cccgcccttacagtgccccgggccgaggcgcgcggcgcgcaatgggttcgtccggacgta
gtggcggaaatagccttcgtcgaatttaccagcgacaatgtcgtgcgccacggcagcttc
cttggcctgcgtgaagacaagcaggcgggcgaggtcaccagggagcaagtaatgacaaca
cccccaagtgagagcgatgtccatgtgtccaaccgtgaccggctcattttcccggaagca
aaggtcaccaaaggccagttggctgattattatgaagctgctggcgcaatcatgctgccg
tggatcgcccatcgtccgatcagcctggtccgctgtccgcagggccgagctaagaaatgc
ttcttccaaaagcatgacagcggcagctttggcgatcatgtgaagcacgtcccgatccgc
gagaaggacggggacgagcaggattatctctatgtcgatgacatagacgggctggtggcc
tgcgtgcagatgggaacgatcgagttccatggctggggttcgcgggtggaggatgtggag
aagcccgaccgcctgatcttcgacttggacccggacgaaggtctggactttgaagatgtg
aaaaaggcggcgcgcgatattcgtcgcaccctagaggatatcgggctgatcagcttcccg
atgttgtcaggcggaaaaggcgtgcatgtcgtcgtgccgttgacgcccgaggcggaatgg
cctgccgtcaaggatttcgccgatcgttttgccagggcgctcgcggccgctgagcctgat
cgatttactgccaccatgagcaaggcgaagcgcaaggggcgcatcttcattgactggctg
cgcaaccagcgtggagccactgccgtgctgccctatgtcgtccgtgctagggaaaatgcg
cccgtggcggcgcccgtcacctgggatgaattggacgatatcgagcgcgccggatcttac
accattgccgatgtggatcagttggtcgagcgggcggggtcgcggcaattgcggggatgg
ggcgaggcgcgccagacgctgccggactattga

DBGET integrated database retrieval system